Date: 20 - 24 April 2020

Loading map...

This 5-day course, with instructors from the Broad Institute (Boston, USA), covers all the steps from raw sequencing data to the obtention of lists of variants using the popular GATK4 software. The 4-day GATK workshop is followed by a last day covering topics on germline and somatic disease variant prioritization instructed by experts from the Unit of Bioinformatics for Precision Oncology (Catalan Institute of Oncology) and the Clinical Bioinformatics Area (Fundación Progreso y Salud).

GATK workshops are designed to provide a comprehensive onboarding experience to new users, as well as access to more advanced understanding for users who are already familiar with the toolkit.

Keywords: GATK, Variant detection, Variant calling, Variant discovery, disease variant, priorization, genomics, oncology

Venue: Institut Català d'Oncologia - L'Hospitalet de Llobregat, 203, Avinguda de la Granvia de l’Hospitalet

City: L'Hospitalet de Llobregat

Region: Barcelona

Country: Spain

Organizer: Catalan Institute of Oncology (ICO), Broad Institute, Bellvitge Biomedical Research Institute (IDIBELL), Fundación Progreso y Salud (FPS) and Spanish National Bioinformatics Institute (INB/ELIXIR-ES)

Host institutions: Catalan Institute of Oncology (ICO)

Eligibility:

  • First come first served

Target audience: mixed audience, GATK newbies, GATK experts, GATK users, variant discovery newbies

Capacity: 40

Event types:

  • Workshops and courses


Activity log