Belgium
Bulk RNASeq: from counts to differential expression
Summer Edition
Date: 2 - 9 June 2023
Timezone: Amsterdam
Language of instruction: English
The course consists of introductory online material (e-learning) on counting and two face-to-face sessions on differential expression analysis in R and all the questions that arise when trying the analysis on your own data.
Keywords: omics, ELIXIR
Venue: Leuven - Campus Gasthuisberg, Herestraat 49
City: Leuven
Country: Belgium
Postcode: 3000
Prerequisites:
Background knowledge of NGS data formats and the first steps in the analysis
workflow (fastqc -> bam files). If you are a newbie in the field, you have to follow
the NGS introduction training first. Experience in R programming is highly recommended.
If you never worked with R, you should attend the R introduction training
first.
Learning objectives:
- Learn how RNA-seq reads are converted into counts
- Understand QC steps that can be performed on RNA-seq reads
- Generate interactive reports to summarize QC information with MultiQC
- Use the Galaxy Rule-based Uploader to import FASTQs from URLs
- Create a Galaxy Workflow that converts RNA-seq reads into counts
Organizer: VIB
Eligibility:
- First come first served
Target audience: Life Science Researchers
Capacity: 20
Event types:
- Workshops and courses
Tech requirements:
R, Rstudio, various R packages
Credit / Recognition: Certificate of attendance recognized by Doctoral School
Cost basis: Cost to non-members
Sponsors: ELIXIR Belgium
Instructors: 
Janick Mathys
Activity log
