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Content provider
- European Bioinformatics Institute (EBI)7
- University of Cambridge Bioinformatics Training4
- Australian BioCommons2
- iAnn2
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Keyword
- Gene expression (gene-expression)5
- Expression Atlas4
- HDRUK4
- ArrayExpress Archive of Functional Genomics Data3
- RNA-Seq3
- Bioinformatics2
- Gene Expression2
- R2
- Sequence Analysis2
- Transcriptomics2
- ABR1
- Advances in spatial omics1
- BIoinformatics1
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- High Throughput Sequencing Analysis1
- Introduction to single cell expression atlas1
- Life cell by cell1
- Mapping1
- NGS1
- Network inference1
- Nextflow1
- Pathway analysis1
- QFAB1
- Quality Control1
- RNA-seq1
- RNASeq1
- SCEA1
- Single Cell Expression Atlas1
- Single cell RNA-seq1
- Spatial transcriptomics1
- UMAP1
- Workflows1
- Workshop1
- gene regulatory networks1
- machine learning1
- nf-core1
- omics data1
- scRNA-seq1
- single-cell1
- single-cells1
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Scientific topic
- Bioinformatics1869
- Genome annotation760
- Exomes749
- Genomes749
- Genomics749
- Personal genomics749
- Synthetic genomics749
- Viral genomics749
- Whole genomes749
- Biological modelling625
- Biological system modelling625
- Systems biology625
- Systems modelling625
- Biomedical research518
- Clinical medicine518
- Experimental medicine518
- General medicine518
- Internal medicine518
- Medicine518
- Bottom-up proteomics382
- Discovery proteomics382
- MS-based targeted proteomics382
- MS-based untargeted proteomics382
- Metaproteomics382
- Peptide identification382
- Protein and peptide identification382
- Proteomics382
- Quantitative proteomics382
- Targeted proteomics382
- Top-down proteomics382
- Data visualisation223
- Data rendering216
- Data management200
- Metadata management200
- Research data management (RDM)200
- Immunology198
- Exometabolomics190
- LC-MS-based metabolomics190
- MS-based metabolomics190
- MS-based targeted metabolomics190
- MS-based untargeted metabolomics190
- Mass spectrometry-based metabolomics190
- Metabolites190
- Metabolome190
- Metabolomics190
- Metabonomics190
- NMR-based metabolomics190
- Computational pharmacology166
- Pharmacoinformatics166
- Pharmacology166
- Comparative transcriptomics136
- Transcriptome136
- Transcriptomics136
- Data mining134
- Pattern recognition134
- Aerobiology110
- Behavioural biology110
- Biological rhythms110
- Biological science110
- Biology110
- Chronobiology110
- Cryobiology110
- Reproductive biology110
- Epigenomics91
- Disease85
- Pathology85
- Functional genomics80
- Biomathematics73
- Computational biology73
- Mathematical biology73
- Theoretical biology73
- Cloud computing72
- Computer science72
- HPC72
- High performance computing72
- High-performance computing72
- Active learning71
- Ensembl learning71
- Kernel methods71
- Knowledge representation71
- Machine learning71
- Neural networks71
- Recommender system71
- Reinforcement learning71
- Supervised learning71
- Unsupervised learning71
- Electrophysiology64
- Physiology64
- RNA-Seq analysis63
- Data archival59
- Data archiving59
- Data curation59
- Data curation and archival59
- Data preservation59
- Database curation59
- Research data archiving59
- Metagenomics56
- Shotgun metagenomics56
- FAIR data54
- Findable, accessible, interoperable, reusable data54
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Operation
- Biological network analysis1
- Biological network modelling1
- Biological network prediction1
- Biological pathway analysis1
- Biological pathway modelling1
- Biological pathway prediction1
- Data analysis1
- Feature expression analysis1
- Functional clustering1
- Functional pathway analysis1
- Functional profiling1
- Functional sequence clustering1
- Gene expression profile construction1
- Gene expression profile generation1
- Gene expression profiling1
- Gene expression quantification1
- Gene transcription profiling1
- Network analysis1
- Network comparison1
- Network modelling1
- Network prediction1
- Network simulation1
- Network topology simulation1
- Non-coding RNA profiling1
- Pathway analysis1
- Pathway comparison1
- Pathway modelling1
- Pathway prediction1
- Pathway simulation1
- Protein profiling1
- RNA profiling1
- mRNA profiling1
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Event type
- Workshops and courses20
- Meetings and conferences1
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Venue
- Craik-Marshall Building4
- , 3
- Campus di Fisciano, Università degli Studi di Salerno, Via Giovanni Paolo II, n. 1321
- European Bioinformatics Institute, Hinxton1
- Fondazione Edmund Mach, Palazzo della Ricerca e della Conoscenza, Via E. Mach 1, San Michele all'Adige1
- Piazzale Aldo Moro, 5, 5 Piazzale Aldo Moro1
- Sapienza University of Rome1
- Stanford University, Li and Ma Science Library, 376 Lomita Drive1
- University of California, Davis, Shields Library1
- University of California, San Diego, Medical Education and Telemedicine Building, San Diego1
- University of Queensland1
- Westin Boston Waterfront1
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City
- Cambridge4
- Roma2
- Boston1
- Brisbane1
- Fisciano1
- Online1
- San Michele all'Adige1
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- United Kingdom5
- Italy4
- United States of America4
- Australia2
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Sponsor
- ELIXIR Italy2
- 101100604 - DIGITAL-2022-TRAINING-021
- CIBB 20261
- Co-funded by the European Commission1
- Young InfoLife1
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Target audience
- Graduate students4
- Institutions and other external Institutions or individuals4
- Postdocs and Staff members from the University of Cambridge4
- The module is suitable for researchers interested in gene expression analysis and visualisation3
- This workshop is aimed at wet-lab scientists and bioinformaticians. Participants should have degree-level understanding of molecular biology/genetics and be proficient at using web browsers.3
- Bioinformaticians1
- Bioinformaticians and wet-lab biologists who can program1
- Computational biologists1
- Early Career Researchers (ECRs)1
- Job seeker1
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members1
- PhD Students, Post-Doc research scientists1
- PhD students and young researchers in the life science and computational biology field who are planning to use RNA-seq data and are looking for the best practices to analyze these types of data1
- Small and Medium-sized Enterprises (SMEs)1
- This course is aimed at life science researchers needing to learn more about the basic processing of raw RNA-Seq data and downstream analysis. It will help those wanting to learn how to interpret gene expression data and explore results of biological significance from processed data. Participants will require a basic knowledge of the Unix command line, the Ubuntu 18 operating system and the R statistical packages. We recommend these free tutorials: Basic introduction to the Unix environment: www.ee.surrey.ac.uk/Teaching/Unix Introduction and exercises for Linux: https://training.linuxfoundation.org/free-linux-training Basic R concept tutorials: www.r-tutor.com/r-introduction Regardless of your current knowledge we encourage successful participants to use these, and other materials, to prepare for attending the course and future work in this area.1
- This workshop is aimed at researchers who wish to use and submit functional genomics data. This workshop will not however cover the analysis of such data.1
- biological data analysts1
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Eligibility
- Registration of interest4
- First come first served2
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Language
- English2
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Node
- EMBL-EBI7
- United Kingdom4
- Italy2
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Collection
- ELIXIR Systems Biology Community: training events and materials1
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Instructor
- Nancy George4
- Silvie Fexova2
- Andrea Sottosanti1
- Anton Petrov1
- Blake Sweeney1
- Dario Righelli1
- Denise Carvalho-Silva1
- Dora Tortarolo1
- Emily Perry1
- Grete Francesca Privitera 1
- Kostas Billis1
- Leanne Haggerty1
- Liis Kolberg1
- Roberto Pagliarini 1
- Sam Holt1
- Simon Andrews1
- Sung Gong1
- Thawfeek Mohamed Varusai1
- Tom Hancocks1
- Vladimir Kiselev1
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