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- Ensembl Variant Effect Predictor29
- HPC29
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- Ensembl Genomes27
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- CONVERGE26
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- High Performance Computing24
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- RNA-Seq22
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- Europe PubMed Central19
- Expression Atlas19
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- Bioinformatics702
- Genome annotation299
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- Biological modelling206
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- Biomedical research185
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- General medicine185
- Internal medicine185
- Medicine185
- Data management154
- Metadata management154
- Research data management (RDM)154
- Bottom-up proteomics145
- Discovery proteomics145
- MS-based targeted proteomics145
- MS-based untargeted proteomics145
- Metaproteomics145
- Peptide identification145
- Protein and peptide identification145
- Proteomics145
- Quantitative proteomics145
- Targeted proteomics145
- Top-down proteomics145
- Exometabolomics56
- Immunology56
- LC-MS-based metabolomics56
- MS-based metabolomics56
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- Metabolites56
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- Computational pharmacology53
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- Cloud computing52
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- High-performance computing52
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- FAIR data50
- Findable, accessible, interoperable, reusable data50
- Mathematical biology50
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- Data archival49
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- Data curation and archival49
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- Active learning46
- Ensembl learning46
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- Knowledge representation46
- Machine learning46
- Neural networks46
- RNA-Seq analysis46
- Recommender system46
- Reinforcement learning46
- Supervised learning46
- Unsupervised learning46
- Metagenomics41
- Pipelines41
- Shotgun metagenomics41
- Software integration41
- Tool integration41
- Tool interoperability41
- Workflows41
- Antimicrobial stewardship37
- Medical microbiology37
- MicroRNA sequencing37
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- Microbiological surveillance37
- Microbiology37
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- Molecular microbiology37
- RNA sequencing37
- RNA-Seq37
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- Operation
- Data handling39
- File handling39
- File processing39
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- Data brokering23
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- Data deposition brokering23
- Data submission23
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- Data analysis9
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- Allele calling5
- Data visualisation5
- Exome variant detection5
- Genome variant detection5
- Germ line variant calling5
- Molecular visualisation5
- Mutation detection5
- Plotting5
- Rendering5
- Somatic variant calling5
- Variant calling5
- Variant mapping5
- Visualisation5
- de novo mutation detection5
- Docking simulation4
- Macromolecular docking4
- Molecular docking4
- Molecular surface analysis4
- Structure database search4
- Data formatting3
- Data reformatting3
- File format conversion3
- File formatting3
- File reformatting3
- Format conversion3
- Functional genome annotation3
- Genome annotation3
- Metagenome annotation3
- Molecular dynamics3
- Molecular dynamics simulation3
- Optimisation and refinement3
- Protein dynamics3
- Structural genome annotation3
- Structure analysis3
- Attribute selection2
- Binding site prediction2
- CG analysis2
- Chemical class enrichment2
- Chemical similarity enrichment2
- Contact map prediction2
- Data filtering2
- Feature extraction2
- Feature projection2
- Feature selection2
- File format validation2
- Format validation2
- Hydrogen bond calculation2
- Ligand-binding site detection2
- Ligand-binding site prediction2
- MD analysis2
- Nucleic Acid Dynamics Analysis2
- Peptide-protein binding prediction2
- Protein Dynamics Analysis2
- Protein binding site detection2
- Protein binding site prediction2
- Protein contact map prediction2
- Protein flexibility and motion analysis2
- Protein flexibility prediction2
- Protein folding pathway prediction2
- Protein motion prediction2
- Protein property calculation2
- Protein property calculation (from sequence)2
- Protein property calculation (from structure)2
- Protein property rendering2
- Protein structural property calculation2
- Protein structure prediction2
- Residue contact prediction2
- Residue interaction calculation2
- Residue interaction prediction2
- Sequence filtering2
- Simulation analysis2
- Structural property calculation2
- Trajectory analysis2
- Trajectory visualization2
- Variable selection2
- Variable subset selection2
- rRNA filtering2
- Alternative splicing analysis1
- Alternative splicing detection1
- Alternative splicing prediction1
- Annotation1
- Biological network analysis1
- Biological network modelling1
- Biological network prediction1
- Biological pathway analysis1
- Biological pathway modelling1
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- Tool
- Data Stewardship Wizard28
- European Nucleotide Archive (ENA)10
- RDMkit10
- AutoDock Vina7
- Ontology Lookup Service7
- SPCI7
- AlphaFold 25
- omnipy5
- PyMOL4
- AlphaCharges2
- AlphaFill2
- AlphaFind2
- FAIRDOM-SEEK2
- Galaxy2
- Gromacs2
- Metabolic Atlas2
- PDBe2
- TmAlphaFold database2
- WorkflowHub2
- ANASTASIA1
- BioSamples1
- BioTranslator1
- CAVER1
- CAVER Web1
- CalFitter1
- CaverDock1
- ChEMBL1
- DECIPHER1
- DESeq21
- DMPortal - BioData.pt Data Management Portal1
- Data Information System (DAISY)1
- EGA1
- Ensembl1
- EnzymeMiner1
- FireProt1
- FireProt 2.01
- FireProt ASR1
- FireProtDB1
- HADDOCK web portal1
- HotSpot Wizard1
- Lab Integrated Data (LabID)1
- LoopGrafter1
- Open PHACTS API1
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- PDBe-KB1
- SEEK1
- Snakemake1
- SoluProt1
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- Tamarind1
- The Chemistry Development Kit1
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- , 319
- Ghent - VIB/UGent FSVM II, Technologiepark 75310
- SIB283
- Leuven - Campus Gasthuisberg, Herestraat 49190
- European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus120
- European Bioinformatics Institute, Hinxton117
- Leuven - Park Inn by Radisson, Martelarenlaan 3688
- Online78
- University of Cambridge, Downing Site71
- Internet60
- Belval Campus, Luxembourg38
- Antwerp - Campus Drie Eiken UAntwerpen, Universiteitsplein 136
- European Bioinformatics Institute (EMBL-EBI) - Training Room 1, Wellcome Genome Campus36
- European Bioinformatics Institute (EMBL-EBI) - Training Room 2, Wellcome Genome Campus33
- Ghent - Bio-Accelerator Meeting Center, Technologiepark 2132
- Ghent - Clemenspoort, Overwale 331
- Park Inn by Radisson Leuven30
- European Molecular Biology Laboratory29
- EMBL Heidelberg26
- Clemenspoort Gent24
- Moscone North Convention Center24
- University of Melbourne24
- Brussels - SciMingo Office, Leopoldstraat 623
- University of Oklahoma23
- online23
- Stanford University22
- Wellcome Trust Genome Campus22
- Brussels - VUB Campus Etterbeek, Pleinlaan 221
- Ghent - VIB/UGent FSVM I, Technologiepark 7121
- Amsterdam, Netherlands19
- University of Illinois18
- Earlham Institute (EI), Colney Lane17
- European Bioinformatics Institute17
- Park Inn by Radisson Leuven, Martelarenlaan 3617
- SciLifeLab Uppsala - Navet, Husargatan 317
- University of Oslo17
- Australia16
- Griffith University16
- University of Toronto16
- Oklahoma State University15
- Virtual, EMBL-EBI15
- Wellcome Genome Campus15
- European Bioinformatics Institute (EMBL-EBI)14
- Federal Reserve Board14
- Heidelberg14
- Imperial College London14
- Place Georges Teissier14
- University of Alberta14
- room G60, Hodgkin Building, Newcomen Street14
- Bio-Accelerator Meeting Center Ghent, Technologiepark 2113
- Lawrence Berkeley National Laboratory13
- Leiden, Netherlands13
- United Kingdom13
- 187 Grattan St, 187, Grattan Street12
- University of Arizona12
- The Diamond, Workroom 111
- The University of Washington eScience Institute11
- University of British Columbia11
- University of Manchester11
- University of Oxford11
- University of Southampton11
- 24 chemin de borderouge CS 52627 – Auzeville10
- Bio-Accelerator Meeting Center Ghent10
- Macquarie University10
- Tallinn University, 25 Narva maantee10
- University College London10
- University of Chicago10
- iGent10
- Birmingham Metabolomics Training Centre9
- Janelia Farm Research Campus9
- North-West University9
- School of Biosciences - University of Birmingham9
- VIB HQ, Suzanne Tassierstraat 19
- Campus Gasthuisberg, Herestraat 498
- EBI, Wellcome Genome Campus8
- EMBL8
- EMBL-EBI8
- Lab-14, VLSCI8
- Leuven - Provinciehuis Vlaams-Brabant, Provincieplein 18
- Lister Hill Auditorium in Building 38A8
- ONLINE8
- Pacific Northwest National Laboratory8
- Pam Liversidge Design Studio 1 - D068
- Simon Fraser University8
- University of Texas at Arlington8
- University of Waterloo8
- Wageningen, Netherlands8
- 7 avenue Blaise Pascal7
- Bartolome House, Seminar Room EG037
- EMBL-EBI, Wellcome Genome Campus7
- Hinxton7
- Microsoft Teams7
- National Institute of Standards and Technology7
- Onsite7
- The University of Queensland7
- Translational Research Institute, 37, Kent Street7
- UW Madison7
- University of California, San Francisco7
- University of Edinburgh7
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- Zwijnaarde399
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- Bern55
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- London48
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- Gent43
- Antwerpen39
- Amsterdam38
- Sheffield38
- Barcelona37
- San Diego37
- Berlin36
- Espoo34
- Washington34
- Toronto32
- Leiden30
- Streamed from Lausanne30
- Rome29
- Norwich28
- Streamed from Basel28
- Zürich25
- Birmingham23
- Wageningen22
- Lisbon20
- Liverpool20
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- Sydney19
- Montpellier18
- Oslo18
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- New York17
- Paris17
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- Sheffield, or online15
- Bethesda14
- Geneva14
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- Chicago13
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- Bologna8
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- Vancouver8
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- Country
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- Australia284
- Netherlands222
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- Canada95
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- Finland43
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- Czech Republic29
- Czechia24
- South Africa24
- Brazil19
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- India15
- Israel13
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- Malaysia11
- Denmark10
- Virtual10
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- Egypt6
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- Nigeria6
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- Amsterdam4
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- Wageningen4
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- Korea (Republic of)3
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- Philippines3
- Romania3
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- nor3
- Cuba2
- Ghana2
- Hogeschool Leiden online2
- Indonesia2
- Panama2
- Ukraine2
- Afghanistan1
- Amsterdam UMC1
- Bangladesh1
- Breda1
- Cancer Research UK Therapeutic Discovery Laboratories - London Bioscience Innovation Centre1
- Croatia1
- Delft1
- EMBL-EBI1
- ErasmusMC Rotterdam Netherlands1
- Global1
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- Latvia1
- Leiden1
- Lorentz Center@Snellius1
- Maastricht University1
- Monaco1
- Morocco1
- Online / webinar1
- Qatar1
- Russian Federation1
- SURF Utrecht and DANS in The Hague1
- Science Park (building Lab42)1
- Utrecht University1
- Viet Nam1
- Virtual/online1
- Vrije Universiteit Amsterdam1
- W31
- Wageningen Campus1
- Wageningen University and Research1
- eu1
- room V-02-0181
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- Sponsor
- ELIXIR Belgium194
- Vlaams Supercomputer Centrum33
- NERC28
- SciComm Academy27
- ELIXIR Europe23
- de.NBI - German Network for Bioinformatics Infrastructure Service, Training, Cooperations & Cloud Computing23
- Centre for Digital Life Norway19
- Australian BioCommons15
- Melbourne Bioinformatics12
- The University of Melbourne12
- University of Freiburg12
- ELIXIR CZ10
- ELIXIR9
- Helis Academy9
- Institut Français de Bioinformatique9
- Erasmus Medical Center8
- ABRomics7
- ELIXIR Norway7
- ELIXIR-CONVERGE7
- Flanders BioImaging7
- Ghent University7
- Avans Hogeschool6
- European Union6
- The Carpentries6
- The Pennsylvania State University6
- ELIXIR Converge5
- ELIXIR Italy5
- This course is funded as part of the UKRI Innovation Scholars. Data Science Training in Health and Bioscience call (DaSH). (MR/V038966/1)5
- H3ABioNet4
- MWK - Ministry of Science, Research and Arts4
- Palacky University Olomouc4
- Pôle National de Données de Biodiversité4
- SciLifeLab4
- de.NBI4
- 101100604 - DIGITAL-2022-TRAINING-023
- Aurora Alliance3
- BePa3
- COST Association3
- Co-funded by the European Commission3
- Digital Scholarship Centre (University of Oslo)3
- European Commission3
- FWO3
- INB/ELIXIR-ES3
- Interreg Vlaanderen-Nederland3
- Merck3
- MetaboHUB3
- NBIS3
- Palacký University Olomouc3
- RDA-Portugal3
- de.KCD - German Competence Center Cloud Technologies for Data Management and Processing3
- BD2
- Bioké2
- AIBIO-UK2
- BIOMEÇ2
- BioExcel2
- BioMedData2
- Brazilian Biophysical Society2
- ELIXIR EXCELERATE2
- ELIXIR Sweden2
- ELIXIR Training Platform2
- ELIXIR-IIB2
- ELIXIR-SE2
- ELIXIR-UK2
- EMBO2
- EOSC | FAIR2Adapt2
- EOSC-Life2
- ERASMUS+2
- EU H20202
- Elixir Belgium2
- European Union - NextGenerationEU2
- Flanders2
- Funded by the European Union2
- Futuros Sustentáveis2
- Genscript2
- IFB2
- IRCCS Ospedale San Raffaele2
- LINQ management GmbH2
- Muséum national d'Histoire naturelle2
- NFDI4Microbiota2
- PRR - Recovery and Resilience Plan2
- Pan-Africa network for genomic surveillance of poverty related diseases and emerging pathogens2
- Pan-African Consortium for the Evaluation of Antituberculosis Antibiotics2
- Provincie Antwerpen2
- RFMF2
- Recovery and Resilience Plan2
- Research Council of Norway2
- South African National Bioinformatics Institute, University of the Western Cape2
- Spanish National Bioinformatics Institute (INB/ELIXIR-ES)2
- Spanish Supercomputing Network (RES)2
- Swiss Institute of Bioinformatics (SIB)2
- Swiss Tropical and Public Health Institute2
- The European & Developing Countries Clinical Trials Partnership2
- The European Union2
- The Foundation for Innovative New Diagnostics2
- Twist Bioscience2
- Universidade Federal Do Rio de Janeiro (UFRJ)2
- Università Vita-Salute San Raffaele2
- Vlaanderen2
- Abcam1
- Alvéole1
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- Target audience
- PhD students361
- Graduate students294
- Academics292
- Industry292
- PhD283
- Researchers170
- Life Science Researchers46
- Biologists41
- Beginner37
- bioinformaticians30
- Students28
- Master students27
- PhD Students21
- Molecular Biologists18
- Post Docs17
- life scientists17
- All postgraduates15
- post-docs15
- PI14
- PhD candidates14
- Bioinformaticians13
- Pathologists12
- PhD candidate12
- Professors12
- Graduate Students11
- Wet-lab researchers and bioinformaticians10
- Biological sciences research students and postdocs who may want to use HPC in their research.Please note that Biochemistry first year graduate students book this course via their Moodle site not here.9
- Biologists, Genomicists, Computer Scientists9
- Technicians9
- Undergraduate students9
- data stewards9
- Masters students8
- data managers8
- data steward / data manager8
- researchers8
- Beginners7
- DMP writers7
- Data managers7
- Life Scientists7
- Postdoctoral Researchers7
- Senior scientist/ Principal investigator7
- postdoctoral researchers7
- Bioinformatician6
- Clinicians6
- Expert Support6
- PostDocs6
- Postdoctoral Fellows6
- Researcher6
- Trainers6
- Data stewards5
- Early Career Researcher5
- Life sciences5
- PIsSenior scientist/ Principal investigator5
- Post-Docs5
- Researcher in life sciences5
- Scientists5
- medical scientists5
- postdocs5
- software developers, bioinformaticians5
- Anyone intersted in GWAS and using the H3Africa genotyping chip4
- Bioinformaticians and wet-lab biologists who can program in Perl, Python or R.4
- Computational biologists4
- Data Scientists4
- Early Career Researchers (ECRs)4
- Early career investigators4
- Engineers4
- Government4
- PhD Students, Post-Doc research scientists4
- PhD student4
- Post docs4
- Postgraduate students4
- Principal Investigators4
- Professional science4
- Training Designers4
- Training instructors4
- Wet-lab Researchers4
- beginner bioinformaticians4
- Academic3
- Anyone who wants to become a teacher / trainer or a better one3
- Bioinformaticians and wet-lab biologists who can program in Python or R.3
- Biologist3
- Biomedical researchers3
- Clinical Scientists3
- Core Facility Managers3
- Data Managers3
- Evolutionary Biologists3
- Job seeker3
- Lab managers3
- Post-Doctoral Fellows3
- Post-docs3
- Postdoctoral researchers3
- Programmers3
- Research Scientists3
- Research presentation3
- Research scientists3
- Small and Medium-sized Enterprises (SMEs)3
- Student3
- This course is aimed at advanced PhD students and post-doctoral researchers who are applying or planning to apply high throughput sequencing technologies in cancer research and wish to familiarise themselves with bioinformatics tools and data analysis methodologies specific to cancer data. Familiarity with the technology and biological use cases of high throughput sequencing is required, as is some experience with R/Bioconductor (basic understanding of the R syntax and ability to manipulate R objects) and the Unix/Linux operating system.3
- This workshop is aimed at wet-lab scientists and bioinformaticians. Participants should have degree-level understanding of molecular biology/genetics and be proficient at using web browsers.3
- basic research3
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- Eligibility
- First come first served274
- Registration of interest215
- By invitation39
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- Language
- English1790
- Italian3
- German2
- Portuguese2
- Czech1
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- Node
- EMBL-EBI1494
- Belgium1347
- Switzerland590
- Germany265
- Netherlands247
- Sweden212
- France189
- United Kingdom175
- Finland137
- Italy114
- Estonia100
- Luxembourg78
- Norway70
- Portugal67
- Czech Republic50
- Spain32
- Slovenia31
- Greece23
- Cyprus8
- Denmark5
- Ireland4
- Israel4
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- Collection
- ELIXIR Biodiversity Community43
- ELIXIR Systems Biology Community: training events and materials23
- PHENotyping and EnviroTyping (PHENET training collection)11
- HemaFAIR Training: Applying FAIR Principles in Hematology Research9
- Impact of research infrastructures5
- Single-cell Omics Community - collection of courses and materials4
- PINK project3
- ELIXIR hCNV community - collection of courses and materials.2
- ELIXIR Toxicology Community2
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- BioC20261
- Byte-sized RSE series1
- CSAMA 20261
- ELIXIR Federated Human Data Community1
- EuroBioC20261
- VEIS - Value of the EGA for Industry and Society1
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- Contributor
- Justin Bürger Michaelis3
- Mateusz Pawlik3
- Diego Jahn 1
- Jakub Sedzinski1
- Jörn Starruß1
- Katarzyna Kamieniecka1
- Khaled Jum'ah1
- Krzysztof Poterlowicz1
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