Test Space Please Ignore
  • Log In
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSS makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSS in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Diffraction experiment3
    • Imaging3
    • Microscopy3
    • Microscopy imaging3
    • Optical super resolution microscopy3
    • Photonic force microscopy3
    • Photonic microscopy3
    • Assembly1
    • Biodiversity1
    • Biological sequences1
    • Computational ecology1
    • Ecoinformatics1
    • Ecological informatics1
    • Ecology1
    • Ecosystem science1
    • Sequence analysis1
    • Sequence assembly1
    • Sequence databases1
    • Show N_FILTERS more
    • Tool
    • Galaxy14
    • GEMINI4
    • CellProfiler2
    • FastQC2
    • BLAST1
    • Bandage1
    • Biopython1
    • Cutadapt1
    • FASTQE1
    • Galaxy Image Analysis1
    • NanoPlot1
    • OBITools1
    • PyTorch1
    • SPAdes1
    • VelvetOptimiser1
    • ggplot21
    • pycoQC1
    • scikit-image1
    • Show N_FILTERS more
    • Content provider
    • GTN14
    • Show N_FILTERS more
    • Keyword
    • Climate7
    • Imaging3
    • climate3
    • Image segmentation2
    • interactive-tools2
    • pangeo2
    • Assembly1
    • Deep learning1
    • EBV dataset1
    • EBV workflow1
    • Ecology1
    • Image annotation1
    • Introduction to Galaxy Analyses1
    • Multi-channel image1
    • Object feature extraction1
    • Sequence analysis1
    • biodiversity1
    • community composition EBV class1
    • deutsch1
    • eDNA1
    • ecology1
    • español1
    • genetic composition EBV class1
    • italiano1
    • jupyter-notebook1
    • metabarcoding1
    • Show N_FILTERS more
    • Competency level
    • Beginner12
    • Intermediate2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International14
    • Show N_FILTERS more
    • Target audience
    • Students14
    • Show N_FILTERS more
    • Author
    • Anne Fouilloux9
    • Beatriz Serrano-Solano2
    • Ryan Abernathey2
    • Alexandre Cormier1
    • Anthony Bretaudeau1
    • Basile Goussard1
    • Bérénice Batut1
    • Cameron Hyde1
    • Christopher Barnett1
    • Coline Royaux1
    • Dave Clements1
    • Diana Chiang Jurado1
    • Eric Coissac1
    • Erwan Corre1
    • Frédéric Boyer1
    • Hui Tang1
    • Jean-Karim Hériché1
    • Laura Leroi1
    • Leonid Kostrykin1
    • Maria Doyle1
    • Michele Maroni1
    • Nadia Goué1
    • Olha Nahorna1
    • Olivier Norvez1
    • Rosie Fisher1
    • Saskia Hiltemann1
    • Simon Gladman1
    • Stéphanie Robin1
    • Yvan Le Bras1
    • Show N_FILTERS more
    • Contributor
    • Anne Fouilloux
    • Saskia Hiltemann271
    • Helena Rasche224
    • Björn Grüning220
    • Bérénice Batut121
    • Nicola Soranzo68
    • Cristóbal Gallardo55
    • Niall Beard44
    • Anthony Bretaudeau42
    • Pavankumar Videm40
    • Martin Čech35
    • Armin Dadras34
    • Gildas Le Corguillé32
    • Mehmet Tekman31
    • Wendi Bacon31
    • Teresa Müller30
    • William Durand30
    • Wolfgang Maier30
    • Beatriz Serrano-Solano28
    • Melanie Föll28
    • Anup Kumar23
    • Yvan Le Bras23
    • Simon Bray21
    • Maria Doyle19
    • Leonid Kostrykin17
    • Marie Josse16
    • Subina Mehta16
    • Deepti Varshney15
    • Tristan Reynolds15
    • Paul Zierep14
    • Julia Jakiela13
    • Lucille Delisle13
    • Diana Chiang Jurado12
    • Nate Coraor12
    • Anton Nekrutenko11
    • Delphine Lariviere10
    • Marisa Loach10
    • Pablo Moreno10
    • Simon Gladman9
    • Amirhossein Naghsh Nilchi8
    • Anna Syme8
    • David López8
    • Kaivan Kamali8
    • Marius van den Beek8
    • Matthias Bernt8
    • Mélanie Petera8
    • Stéphanie Robin8
    • Daniela Schneider7
    • Verena Moosmann7
    • Alexandre Cormier6
    • Clemens Blank6
    • Florian Heyl6
    • Hans-Rudolf Hotz6
    • Mallory Freeberg6
    • Morgan Howells6
    • Paulo Cilas Morais Lyra Junior6
    • Pratik Jagtap6
    • Alireza Khanteymoori5
    • Bert Droesbeke5
    • Christopher Barnett5
    • Florian Christoph Sigloch5
    • Peter van Heusden5
    • Timothy J. Griffin5
    • Clea Siguret4
    • Fabio Cumbo4
    • Linelle Abueg4
    • Riccardo Massei4
    • Bazante Sanders3
    • Coline Royaux3
    • Dave Clements3
    • Ekaterina Polkh3
    • Engy Nasr3
    • Enis Afgan3
    • Joachim Wolff3
    • Katarzyna Kamieniecka3
    • Khaled Jum'ah3
    • Mateo Boudet3
    • Miaomiao Zhou3
    • Natalie Whitaker-Allen3
    • Swathi Nataraj3
    • Timon Schlegel3
    • Alex Ostrovsky2
    • Anika Erxleben2
    • Carlos Chee Mendonça2
    • Christine Oger2
    • Christoph Stritt2
    • CicoZhang2
    • Donny Vrins2
    • Esteban Perez-Wohlfeil2
    • Fidel Ramirez2
    • Florence Combes2
    • Graeme Tyson2
    • Igor Makunin2
    • Jayadev Joshi2
    • Jennifer Hillman-Jackson2
    • Jonathan Kreplak2
    • Jonathan Manning2
    • Junhao Qiu2
    • Kenza Bazi-Kabbaj2
    • Laura Leroi2
    • Show N_FILTERS more
    • Resource type
    • e-learning9
    • slides5
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows
    • Associated Training Datasets15
    • Jupyter Notebook (with Solutions)2
    • Jupyter Notebook (without Solutions)2
    • Show N_FILTERS more
    • Collection
    • ELIXIR Biodiversity Community1
    • Show N_FILTERS more
  • Only show materials from current space
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email

Email Subscription

Register training material

Contributors: Anne Fouilloux

and Related resources: Associated Workflows

and Across all spaces: true

14 materials found
  • e-learning

    Using BioImage.IO models for image analysis in Galaxy

    •• Intermediate
    Imaging Deep learning Image annotation Image segmentation Imaging
  • e-learning

    Getting your hands-on climate data

    • Beginner
    Climate
  • e-learning

    Pangeo Notebook in Galaxy - Introduction to Xarray

    • Beginner
    Climate interactive-tools jupyter-notebook pangeo
  • e-learning

    Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools

    • Beginner
    Climate pangeo
  • e-learning

    Functionally Assembled Terrestrial Ecosystem Simulator (FATES)

    • Beginner
    Climate interactive-tools
  • e-learning

    Nucleoli segmentation and feature extraction using CellProfiler

    •• Intermediate
    Imaging Image segmentation Imaging Multi-channel image Object feature extraction
  • e-learning

    Metabarcoding/eDNA through Obitools

    • Beginner
    Ecology Biodiversity EBV dataset EBV workflow Ecology biodiversity community composition EBV class eDNA genetic composition EBV class metabarcoding
  • e-learning

    Galaxy Basics for everyone

    • Beginner
    Introduction to Galaxy Analyses
  • slides

    De Bruijn Graph Assembly

    • Beginner
    Sequence assembly Assembly
  • slides

    Pangeo ecosystem 101 for everyone

    • Beginner
    Climate climate
  • 1
  • 2
Training eSupport System
[email protected]
Contribute
About TeSS
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSS has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.