Materials - TeSS (Training eSupport System)

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- Genome annotation208
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- Antimicrobial stewardship55
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- Microbiology55
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- Operation
- Annotation9
- Data visualisation5
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- Functional enrichment analysis4
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- Allele calling3
- Exome variant detection3
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- Galaxy363
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- ggplot211
- GEMINI10
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- scikit-image10
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- FreeBayes9
- NanoPlot9
- Trimmomatic9
- Bandage8
- FASTX-Toolkit8
- BCFtools7
- BamTools7
- Biopython7
- HISAT27
- msConvert7
- seqtk7
- Flye6
- MAFFT6
- MaxQuant6
- RStudio6
- Trim Galore6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- Galactic Circos5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- Open Babel5
- RSeQC5
- SRA Software Toolkit5
- StringTie5
- anndata5
- annotatemyids5
- compute_sequence_length5
- gffcompare5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- DESeq24
- Diamond4
- GOseq4
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- MACS4
- MSstats4
- Merqury4
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- Salmon4
- UniProt4
- bx-python4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- QualiMap3
- RDKit3
- SeqCode3
- SortMeRNA3
- Stacks3
- The Protein Data Bank (PDB)3
- UCSC Genome Browser Utilities3
- Vcflib3
- bed to protein map3
- customProDB3
- dRep3
- export2graphlan3
- gfastats3
- humann3
- iqtree3
- lofreq3
- pyGenomeTracks3
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- Standard database or policy
- NCBI Gene4
- Bioconductor3
- Gene3D1
- HumanMine1
- Integrated resource of protein families, domains and functional sites1
- PRINTS1
- SUPERFAMILY1
- Structural Classification Of Proteins1
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- Glittr.org837
- GTN825
- European Bioinformatics Institute (EBI)459
- Bioconductor242
- IFB French Institute of Bioinformatics138
- ERGA Knowledge Hub128
- GOBLET106
- SIB Swiss Institute of Bioinformatics83
- Australian BioCommons81
- Bioinformatics Visualization72
- Software Carpentry70
- NGS Registry60
- Data Carpentry34
- Khan Academy Statistics32
- BY-COVID31
- VIB Bioinformatics Core29
- Canadian Bioinformatics Workshops26
- VIB Training & Conferences20
- Coding for Reproducible Research (CfRR)19
- VBCF BioComp12
- Bioschemas9
- Coursera9
- Genome 3D8
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- Danish National Health Data Science Sandbox5
- InterMine5
- NanoCommons2
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- Keyword
- R325
- Transcriptomics158
- Genomics155
- Python139
- RNA-seq126
- Next generation sequencing119
- Bioinformatics85
- Data management81
- Statistics78
- Galaxy Server administration68
- Data science67
- Machine learning65
- Single-cell sequencing61
- Unix/Linux61
- FAIR data58
- Reproducibility57
- jupyter-notebook55
- Proteomics51
- Data visualization50
- Foundations of Data Science50
- Variant analysis50
- Version control49
- Workflows48
- biodiversity47
- Development in Galaxy45
- Statistics and machine learning45
- metagenomics44
- Genome assembly41
- Single Cell41
- microgalaxy41
- Galaxy36
- General36
- Genome annotation36
- Metagenomics33
- QC32
- training32
- Genome Annotation31
- Microbiome31
- Ecology30
- programming29
- Genome28
- Molecular28
- Nextflow28
- Alignment27
- Assembly27
- Contributing to the Galaxy Training Material27
- Using Galaxy and Managing your Data27
- biohackaton 201827
- Epigenetics26
- Long read sequencing26
- Docker24
- FAIR24
- Phylogenetics23
- ChIP-seq22
- Containerization22
- Shiny22
- Spatial transcriptomics22
- High performance computing21
- ansible21
- Annotation20
- BAM20
- Imaging20
- reproducible research20
- CfRR19
- Differential-expression19
- Metabolomics19
- Microbiology19
- Pre-processing19
- RNA-Seq19
- git-gat19
- scientific computing19
- Artificial intelligence18
- FASTQ18
- NGS18
- Sequence analysis18
- Variant Analysis18
- interactive-tools18
- work-in-progress18
- Climate17
- Comparative genomics17
- Teaching and Hosting Galaxy training17
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- FAIR Data, Workflows, and Research16
- Introduction to Galaxy Analyses16
- R-programming16
- jbrowse116
- Visualisation15
- earth-system15
- gmod15
- prokaryote15
- ATAC-seq14
- Anatomy Physiology and Atlases14
- Image analysis14
- Julia14
- Quarto14
- Statistical-model14
- transcriptomics14
- Cloud computing13
- Enrichment analysis13
- Exploratory-analysis13
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- Competency level
- Not specified2568
- Beginner627
- Intermediate142
- Advanced18
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- Licence
- License Not Specified2073
- Creative Commons Attribution 4.0 International961
- MIT License107
- Creative Commons Attribution Share Alike 4.0 International66
- GNU General Public License v3.0 only44
- Creative Commons Zero v1.0 Universal33
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International23
- BSD 3-Clause "New" or "Revised" License14
- Apache License 2.012
- Creative Commons Attribution Non Commercial Share Alike 4.0 International10
- CeCILL Free Software License Agreement v2.13
- Creative Commons Attribution Non Commercial 4.0 International3
- Artistic License 2.02
- GNU Affero General Public License v3.0 only2
- Do What The F*ck You Want To Public License1
- The Unlicense1
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- Target audience
- Students536
- PhD students162
- Clinicians119
- Galaxy Administrators113
- Instructors52
- Novice44
- post-docs43
- Life Science Researchers35
- Intermediate26
- beginner bioinformaticians24
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- Biologists16
- Biologists, Genomicists, Computer Scientists16
- Beginners13
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- bioinformaticians9
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- biocurators7
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- PhD5
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- biologists4
- postgrad4
- postdoc3
- Postgraduate students2
- biology and bioinformatics sophomore undergraduates2
- postdocs2
- software developers, bioinformaticians2
- Anyone wants to start using the Unix/Linux OS1
- Bachelor students1
- Beginner informatics1
- Bioinformatician1
- Bioinformatics1
- Biomedical researchers1
- Clinical Scientists1
- Educators1
- High School Students1
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- Life sciences1
- Master students1
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- Postdoctoral researchers1
- Prospective and existing trainers1
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- Structural Biologists1
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- Training instructors1
- Undergraduate students1
- University and College Level Students1
- Users1
- adults1
- beginner1
- computational scientists1
- early stage phytopathogen researchers1
- experimeintal biologist researchers1
- field biologist researchers1
- geneticists1
- healthcare professionals1
- high school1
- life scientists1
- master1
- plant researchers1
- postdoctoral researchers1
- principle investigators1
- programmers1
- scientists1
- web developers1
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- Author
- Helena Rasche127
- Bérénice Batut111
- SIB Swiss Institute of Bioinformatics108
- Martin Morgan97
- Saskia Hiltemann65
- The Carpentries Incubator52
- Björn Grüning49
- bioinformatics.ca35
- Simon Gladman33
- bebatut32
- bgruening32
- Anthony Bretaudeau28
- Anton Nekrutenko28
- Yvan Le Bras28
- Nate Coraor27
- Subina Mehta27
- John Chilton25
- Nicola Soranzo25
- Teaching materials at the Harvard Chan Bioinformatics Core25
- The Carpentries24
- Fotis E. Psomopoulos21
- Michelle Brazas21
- NBIS - National Bioinformatics Infrastructure Sweden20
- posit-conf-202320
- Anne Fouilloux19
- Coding for Reproducible Research Initiative19
- Marie Josse19
- The Gulbenkian Training Programme in Bioinformatics19
- Wendi Bacon19
- Bazante Sanders18
- Terri Attwood18
- UC Davis Bioinformatics Core Training Page18
- Data Carpentry17
- Mehmet Tekman17
- posit::conf(2024)17
- shiltemann17
- Paul Zierep16
- Wandrille Duchemin16
- Cristóbal Gallardo15
- Samaha, Georgina15
- Pratik Jagtap14
- nekrut14
- CRUK CI Bioinformatics Core13
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- James Johnson13
- Katherine Do13
- Maria Doyle13
- Wolfgang Maier13
- Jenny Drnevich @jenny12
- Katarzyna Kamieniecka12
- Krzysztof Poterlowicz12
- Marius van den Beek12
- Melanie Föll12
- Simon Bray12
- András Aszódi11
- Anup Kumar11
- Geert van Geest11
- Julia Jakiela11
- Pavankumar Videm11
- Various11
- Canadian Bioinformatics Workshops10
- Daniel Blankenberg10
- Fred Hutch Data Science Lab10
- Khaled Jum'ah10
- Martin Čech10
- Anika Erxleben9
- ELIXIR Estonia9
- Lucille Delisle9
- Praveen Kumar9
- allegra.via Via9
- rstudio::conf(2022)9
- Anne Pajon8
- Avans Hogeschool8
- Bastian Schiffthaler @bastian8
- Diana Chiang Jurado8
- Emma Leith8
- Joachim Wolff8
- Kaivan Kamali8
- Nicolas Delhomme @delhomme8
- Patricia Palagi8
- Stéphanie Robin8
- Sundeep Agarwal8
- Timothy J. Griffin8
- pajanne8
- Alex Ostrovsky7
- Alexandre Cormier7
- Anna Syme7
- Beatriz Serrano-Solano7
- Biocore@CRG7
- Bioinformatics, Rockefeller University7
- Christopher Barnett7
- Erwan Corre7
- Florian Christoph Sigloch7
- Gildas Le Corguillé7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
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- Contributor
- Saskia Hiltemann587
- Helena Rasche493
- Björn Grüning417
- Bérénice Batut263
- Nicola Soranzo180
- Martin Čech128
- Anthony Bretaudeau107
- Cristóbal Gallardo104
- Niall Beard90
- Toby Hodges82
- Wendi Bacon72
- Nate Coraor70
- François Michonneau69
- Armin Dadras64
- Erin Becker63
- Gildas Le Corguillé63
- Marius van den Beek60
- William Durand59
- Zhian N. Kamvar59
- Mine Cetinkaya-Rundel56
- Katrin Leinweber54
- Simon Gladman54
- Raniere Silva53
- Tracy Teal53
- W. Trevor King52
- Andy Boughton51
- maneesha51
- Katie Anne Mills48
- Maxim Belkin48
- Teresa Müller48
- Beatriz Serrano-Solano47
- Lucille Delisle46
- Mehmet Tekman46
- Yvan Le Bras45
- David Pérez-Suárez44
- Gabriel A. Devenyi44
- Canadian Bioinformatics Workshops43
- Abby Cabunoc Mayes42
- EvanWill42
- Ian Lee42
- Jon Pipitone42
- Jonah Duckles42
- Michael Hansen42
- Piotr Banaszkiewicz42
- Brandon Curtis41
- David Mawdsley41
- Greg Wilson41
- Jemma Stachelek41
- Remi Rampin41
- Allen Lee40
- Andrew Sanchez40
- Michael R. Crusoe40
- Pavankumar Videm40
- Jeff Oliver39
- Joel Nothman39
- Nick Young39
- naught10139
- James Allen38
- Rémi Emonet38
- William L. Close38
- Rayna M Harris37
- Marie Josse36
- Wolfgang Maier36
- Melanie Föll35
- Sarah Brown35
- Gerard Capes34
- Maria Doyle33
- Anup Kumar32
- Renato Alves31
- trk31
- Ana Conrado29
- K.E. Koziar29
- Stephan Druskat29
- Christina K.28
- Subina Mehta28
- Alex Whan27
- Simon Bray27
- Paula Andrea Martinez26
- Anne Fouilloux25
- Michael Joseph25
- Anthony Gitter24
- Donny Vrins24
- João Rodrigues24
- Geert van Geest23
- Peter van Heusden23
- Sarah Stevens22
- Julia Jakiela21
- Robert Davey21
- actions-user21
- Henry Schreiner20
- Hilmar Lapp20
- Bazante Sanders19
- The Gulbenkian Training Programme in Bioinformatics19
- Anton Nekrutenko18
- Leonid Kostrykin18
- Paola Prieto18
- Tristan Reynolds18
- Aaron O'Leary17
- C. Titus Brown17
- Deepti Varshney17
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- e-learning657
- Recorded webinar295
- slides185
- Tutorial74
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- Course materials47
- tutorial47
- exercise26
- hands-on tutorial26
- Slides16
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- online tutorial2
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- Related resource
- Associated Training Datasets327
- Associated Workflows305
- Jupyter Notebook (with Solutions)53
- Jupyter Notebook (without Solutions)53
- Input datasets34
- Associated slides9
- Development in Galaxy slides6
- Quarto/RMarkdown Notebook6
- Proteomics dataset5
- Sequence analysis dataset5
- Transcriptomics dataset5
- Assembly dataset4
- Variant Analysis dataset4
- Assembly slides3
- ChIP-Seq data analysis dataset2
- Epigenetics dataset2
- Galaxy Server administration slides2
- Genome Annotation dataset2
- Metagenomics dataset2
- Sequence analysis slides2
- Contributing to the Galaxy Training Material slides1
- Genome Annotation slides1
- Introduction to Galaxy Analyses dataset1
- Introduction to Galaxy dataset1
- Statistics dataset1
- Transcriptomics slides1
- User Interface and Features dataset1
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- Node
- Switzerland1079
- EMBL-EBI459
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- Collection
- ELIXIR Biodiversity Community7
- PINK project5
- ELIXIR Federated Human Data Community4
- ELIXIR Systems Biology Community: training events and materials4
- ELIXIR SIS-Containers - collection of training materials2
- ELIXIR Toxicology Community2
- Single-cell Omics Community - collection of courses and materials2
- ELIXIR hCNV community - collection of courses and materials.1
- VIP138 SLOT Online Terbaik saat ini di Indonesia1
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