Materials - TeSS (Training eSupport System)

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- Scientific topic
- Algorithms53
- Computer programming53
- Data structures53
- Programming languages53
- Software development53
- Software engineering53
- Exomes51
- Genome annotation51
- Genomes51
- Genomics51
- Personal genomics51
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- Comparative transcriptomics50
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- Transcriptomics50
- Bayesian methods44
- Biostatistics44
- Descriptive statistics44
- Gaussian processes44
- Inferential statistics44
- Markov processes44
- Multivariate statistics44
- Probabilistic graphical model44
- Probability44
- Statistics44
- Statistics and probability44
- Biodiversity41
- Bottom-up proteomics38
- Discovery proteomics38
- MS-based targeted proteomics38
- MS-based untargeted proteomics38
- Metagenomics38
- Metaproteomics38
- Peptide identification38
- Protein and peptide identification38
- Proteomics38
- Quantitative proteomics38
- Shotgun metagenomics38
- Targeted proteomics38
- Top-down proteomics38
- Biological sequences35
- Sequence analysis35
- Sequence databases35
- Assembly34
- Sequence assembly34
- Community analysis32
- Environmental microbiology32
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- Microbiome32
- Molecular community analysis32
- Computational ecology30
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- Ecological informatics30
- Ecology30
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- Diffraction experiment24
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- Optical super resolution microscopy24
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- Antimicrobial stewardship22
- Medical microbiology22
- Microbial genetics22
- Microbial physiology22
- Microbial surveillance22
- Microbiological surveillance22
- Microbiology22
- Molecular infection biology22
- Molecular microbiology22
- DNA variation19
- Genetic variation19
- Genomic variation19
- Mutation19
- Polymorphism19
- Somatic mutations19
- Taxonomy17
- Epigenomics14
- Data management13
- Metadata management13
- Open science13
- Research data management (RDM)13
- Exometabolomics12
- FAIR data12
- Findable, accessible, interoperable, reusable data12
- LC-MS-based metabolomics12
- MS-based metabolomics12
- MS-based targeted metabolomics12
- MS-based untargeted metabolomics12
- Mass spectrometry-based metabolomics12
- Metabolites12
- Metabolome12
- Metabolomics12
- Metabonomics12
- NMR-based metabolomics12
- Evolution10
- Evolutionary biology10
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- Operation
- Data handling1
- Database retrieval1
- File handling1
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- Processing1
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- Query and retrieval1
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- Tool
- Galaxy360
- FastQC35
- SAMtools26
- MultiQC25
- BWA19
- BEDTools16
- fastp16
- scikit-learn16
- JBrowse15
- SCANPY15
- Falco14
- Cutadapt13
- DeepTools13
- BLAST12
- QUAST12
- ggplot212
- BUSCO11
- Galaxy Image Analysis11
- GEMINI10
- STAR10
- scikit-image10
- taxonomy_krona_chart10
- NanoPlot9
- Trimmomatic9
- Bandage8
- FASTX-Toolkit8
- FreeBayes8
- BCFtools7
- BamTools7
- msConvert7
- Biopython6
- Flye6
- HISAT26
- MAFFT6
- MaxQuant6
- Open Babel6
- Trim Galore6
- Unicycler6
- Workflow4Metabolomics6
- gffread6
- seqtk6
- DESeq25
- Galactic Circos5
- MetaPhlAn5
- Minimap25
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC5
- RSeQC5
- RStudio5
- SRA Software Toolkit5
- anndata5
- annotatemyids5
- compute_sequence_length5
- kraken25
- xcms5
- Bowtie 24
- Bwa-mem24
- CellProfiler4
- Diamond4
- GOseq4
- KrakenTools4
- MACS4
- MSstats4
- Merqury4
- Newick Utilities4
- Salmon4
- StringTie4
- The Protein Data Bank (PDB)4
- UniProt4
- bx-python4
- gffcompare4
- mothur4
- snpEff4
- Apollo3
- Bakta3
- Bracken3
- Cardinal3
- Clustal 1.8 (Clustal W, Clustal X)3
- DropletUtils3
- FastTree3
- GenomeScope 2.03
- GraPhlAn3
- InterProScan (EBI)3
- OMArk3
- QualiMap3
- RDKit3
- SeqCode3
- SortMeRNA3
- Stacks3
- UCSC Genome Browser Utilities3
- Vcflib3
- dRep3
- export2graphlan3
- gfastats3
- humann3
- iqtree3
- lofreq3
- pyGenomeTracks3
- snippy3
- Bio3D2
- Bowtie2
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- Standard database or policy
- PRoteomics IDEntifications database1
- The Observational Medical Outcomes Partnership Common Data Model1
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- Content provider
- GTN541
- ELIXIR Estonia5
- Pattern Institute2
- Cloud-SPAN1
- ELIXIR1
- proteomicsML1
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- Keyword
- jupyter-notebook52
- Foundations of Data Science51
- biodiversity46
- Statistics and machine learning43
- Single Cell42
- microgalaxy41
- Proteomics36
- Ecology30
- Genome Annotation30
- Transcriptomics30
- Microbiome28
- Using Galaxy and Managing your Data28
- Assembly26
- FAIR Data, Workflows, and Research24
- metagenomics21
- Imaging19
- Variant Analysis18
- Climate17
- FAIR principles16
- HemaFAIR16
- Introduction to Galaxy Analyses16
- fair16
- jbrowse116
- gmod15
- interactive-tools15
- prokaryote15
- work-in-progress15
- Epigenetics13
- Open Science13
- Sequence analysis12
- assembly12
- earth-system12
- paper-replication12
- European research projects11
- MIGHTS11
- Metabolomics11
- Metadata11
- Research Data Management11
- covid1911
- Data sharing10
- Evolution10
- Image segmentation10
- cyoa10
- data stewardship10
- eukaryote10
- nanopore10
- plants10
- 10x9
- DDA9
- Visualisation9
- ai-ml9
- elixir9
- label-free9
- ocean9
- one-health9
- Computational chemistry8
- Data reuse8
- workflows8
- EBV dataset7
- EBV workflow7
- collections7
- dmp7
- ecology7
- español7
- metabarcoding7
- Overlay6
- R6
- data management6
- deutsch6
- illumina6
- italiano6
- mouse6
- ro-crate6
- transcriptomics6
- 16S5
- HELIOS5
- Large Language Model5
- Rare Diseases5
- SQL5
- bacteria5
- deconvolution5
- label-TMT115
- metatranscriptomics5
- rmarkdown-notebook5
- taxonomic profiling5
- virology5
- Bioimaging4
- Conversion4
- DIA4
- Data management4
- Digital Humanities4
- FAIR4
- Healthcare4
- Multi-channel image4
- Object feature extraction4
- QC4
- amr4
- bulk4
- diversity4
- genetic composition EBV class4
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- Competency level
- Beginner426
- Intermediate112
- Not specified22
- Advanced12
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- Licence
- Creative Commons Attribution 4.0 International569
- MIT License2
- Creative Commons Zero v1.0 Universal1
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- Target audience
- Students
- PhD students153
- Clinicians129
- Galaxy Administrators113
- Researchers88
- Instructors52
- Biologists45
- Life Science Researchers44
- Novice44
- bioinformaticians35
- Bioinformaticians33
- Intermediate26
- PhD candidate26
- Scientific community26
- PhD candidates23
- Biologists, Genomicists, Computer Scientists22
- Data stewards21
- post-docs20
- Bench biologists18
- Data Managers18
- Scientists18
- Academia/ Research Institution17
- Industry17
- Non-Profit Organisation17
- Beginners16
- Data Scientist16
- Data Scientists16
- Data managers16
- Graduate Students16
- Trainers16
- life scientists16
- Post-Doctoral Fellows15
- beginner bioinformaticians15
- Healthcare14
- PhD Students13
- Researcher in life sciences13
- Research Scientists12
- data stewards12
- Biomedical Researchers11
- Computational biologists11
- Master students11
- biocurators11
- software developers, bioinformaticians11
- health professionals9
- Biomedical researchers9
- Life scientists9
- Researcher9
- Training Designers9
- Training instructors9
- biologists9
- Beginner7
- Bioinformatician7
- Life scientists with programming skills7
- PhD7
- Post Docs7
- modelers7
- Health Care Professionals6
- data managers6
- Chemists5
- Clinical Scientists5
- General Interest5
- Graduate students5
- Life Scientists5
- computational scientists5
- healthcare professionals5
- plant researchers5
- Anyone wishing to use bioinformatics resources to find basic information about a virus.4
- Biologists with little or no prior computational experience4
- Curators4
- Laboratory technicians4
- PI4
- Patient Advocates 4
- PhD Scholars, Graduates and Post Graduates, Professors, Associate Professors, Assistant Professors, Bio instruments Professionals, Bio-informatics Professionals, Directors, CEO’s of Organizations, Supply Chain companies, Manufacturing Companies, Software development companies, Research Institutes and members4
- Postgraduate students4
- Undergraduate students4
- Veterinarians4
- postdocs4
- postgrad4
- project manager4
- rare disease patients representatives3
- Bioinformatician, Bioanalysts3
- Data Steward3
- Database users3
- Ontologists3
- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA3
- Technicians3
- data steward / data manager3
- geneticists3
- genomics researchers3
- life science researchers3
- postdoc3
- programmers3
- researchers3
- software engineers3
- teachers3
- Academics2
- Anyone interested in data standardization and/or the ontology approach (i.e. public, end users).2
- Anyone interested in simulation of metabolic models, and in PerMedCoE tools and activities2
- Beginner informatics2
- Bioinformaticians, Biologists with little or no prior computational experience.2
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- Author
- Bérénice Batut73
- Helena Rasche60
- Saskia Hiltemann41
- Anton Nekrutenko28
- Yvan Le Bras27
- Subina Mehta26
- Anthony Bretaudeau23
- The Carpentries22
- Anne Fouilloux21
- Björn Grüning19
- Bazante Sanders18
- Katarzyna Kamieniecka18
- Krzysztof Poterlowicz18
- Mehmet Tekman17
- Marie Josse15
- Nicola Soranzo15
- Cristóbal Gallardo14
- Pratik Jagtap14
- Wendi Bacon14
- Dave Clements13
- Delphine Lariviere13
- Donny Vrins13
- Julia Jakiela13
- Maria Doyle13
- Simon Gladman13
- Wolfgang Maier13
- Anup Kumar12
- James Johnson12
- Katherine Do12
- Melanie Föll12
- Khaled Jum'ah11
- Paul Zierep11
- Pavankumar Videm11
- Simon Bray11
- Fotis E. Psomopoulos10
- Anika Erxleben9
- Praveen Kumar9
- Anne Pajon8
- Avans Hogeschool8
- Diana Chiang Jurado8
- Emma Leith8
- Joachim Wolff8
- Kaivan Kamali8
- Stéphanie Robin8
- Timothy J. Griffin8
- Alexandre Cormier7
- Anna Syme7
- Christopher Barnett7
- Daniel Blankenberg7
- Erwan Corre7
- Florian Christoph Sigloch7
- Laura Cooper7
- Laura Leroi7
- Leonid Kostrykin7
- Matthias Fahrner7
- Michael Charleston7
- Nadia Goué7
- Ray Sajulga7
- Robert Andrews7
- Alex Ostrovsky6
- Andrew Mason6
- Beatriz Serrano-Solano6
- Branka Franicevic6
- Coline Royaux6
- Gildas Le Corguillé6
- Jeremy Goecks6
- Junhao Qiu6
- Marius van den Beek6
- Morgan Howells6
- Paulo Cilas Morais Lyra Junior6
- Philippe Rocca-Serra6
- Sara Morsy6
- Valentin Loux6
- Xenia Perez Sitja6
- Daniela Schneider5
- Dechen Bhuming5
- Diana Pilvar5
- Kellie Snow5
- Korneel Hens5
- Marisa Loach5
- Munazah Andrabi5
- Nick Juty5
- Polina Polunina5
- Raphael Mourad5
- Riccardo Massei5
- Saskia Lawson-Tovey5
- Alireza Khanteymoori4
- Amirhossein Naghsh Nilchi4
- Andrea Bagnacani4
- Clemens Blank4
- Engy Nasr4
- Florian Heyl4
- Guillaume Gricourt4
- Helge Hecht4
- Hélène Chiapello4
- Ioana Popescu4
- Jean-Loup Faulon4
- Joan Hérisson4
- Kenza Bazi-Kabbaj4
- Khai Van Dang4
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- Contributor
- Saskia Hiltemann449
- Helena Rasche373
- Björn Grüning314
- Bérénice Batut186
- Nicola Soranzo89
- Cristóbal Gallardo79
- Anthony Bretaudeau78
- Wendi Bacon58
- Martin Čech55
- Niall Beard55
- Pavankumar Videm47
- Armin Dadras46
- Beatriz Serrano-Solano46
- Teresa Müller46
- William Durand43
- Mehmet Tekman42
- Gildas Le Corguillé40
- Yvan Le Bras40
- Melanie Föll35
- Anup Kumar33
- Wolfgang Maier32
- Marius van den Beek29
- Marie Josse28
- Subina Mehta28
- Simon Bray24
- Anne Fouilloux23
- Donny Vrins22
- Maria Doyle22
- Nate Coraor22
- Peter van Heusden21
- Leonid Kostrykin20
- Anton Nekrutenko18
- Bazante Sanders18
- Julia Jakiela18
- Tristan Reynolds18
- Deepti Varshney17
- Khaled Jum'ah17
- Lucille Delisle17
- Petros Kountouris16
- Pratik Jagtap16
- Paul Zierep15
- Delphine Lariviere14
- Diana Chiang Jurado13
- David López12
- Marisa Loach12
- Mélanie Petera12
- Timothy J. Griffin12
- Daniela Schneider11
- Dave Clements11
- Katarzyna Kamieniecka11
- Matthias Bernt11
- Pablo Moreno11
- Stéphanie Robin11
- Simon Gladman10
- Anna Syme9
- Mallory Freeberg9
- Alexandre Cormier8
- Amirhossein Naghsh Nilchi8
- Florian Heyl8
- Kaivan Kamali8
- Verena Moosmann8
- Christopher Barnett7
- Katherine Do7
- Melissa Burke7
- Morgan Howells7
- Clemens Blank6
- Ekaterina Polkh6
- Florian Christoph Sigloch6
- Hans-Rudolf Hotz6
- Paulo Cilas Morais Lyra Junior6
- Alireza Khanteymoori5
- Bert Droesbeke5
- Clea Siguret5
- Fabio Cumbo5
- Linelle Abueg5
- Riccardo Massei5
- Wandrille Duchemin5
- olisand5
- Andrea Bagnacani4
- Coline Royaux4
- Fotis E. Psomopoulos4
- Joachim Wolff4
- Laura Leroi4
- Nadia Goué4
- Natalie Whitaker-Allen4
- Romane LIBOUBAN4
- Solenne Correard4
- Sotiroula Chatzimatthaiou4
- Anika Erxleben3
- Eli Chadwick3
- Engy Nasr3
- Enis Afgan3
- Erwan Corre3
- Jasper Ouwerkerk3
- Jennifer Hillman-Jackson3
- Kenza Bazi-Kabbaj3
- Krzysztof Poterlowicz3
- Maria Christina Maniou3
- Martijn Kersloot3
- Mateo Boudet3
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- Resource type
- e-learning435
- slides93
- Training materials18
- Lecture16
- Presentation16
- hands-on tutorial14
- lessons8
- course materials2
- Course materials1
- E-Learning1
- Online material1
- Tutorial1
- online course1
- tutorial1
- tutorials1
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- Related resource
- Associated Training Datasets326
- Associated Workflows305
- Jupyter Notebook (with Solutions)49
- Jupyter Notebook (without Solutions)49
- Quarto/RMarkdown Notebook5
- Data Visualisation (theory) 1
- R basics1
- RNA-seq data package1
- compareMS21
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- Node
- Cyprus16
- Netherlands11
- Estonia8
- France2
- Sweden1
- Switzerland1
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- Collection
- HemaFAIR Training: Applying FAIR Principles in Hematology Research16
- ELIXIR Biodiversity Community5
- 523BET - Nhà Cái 523BET Casino Uy Tín Nhất Việt Nam1
- ELIXIR hCNV community - collection of courses and materials.1
- ELIXIR Federated Human Data Community1
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- Status
- Active30
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