Training materials
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ELIXIR TeSS
e-learning
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome assembly binning metagenomics microgalaxy -
ELIXIR TeSS
e-learning
Remove contamination and host reads
• BeginnerMetagenomics Microbial ecology Microbiome host-removal metagenomics microgalaxy preprocessing -
ELIXIR TeSS
e-learning
Annotate, prepare tests and publish Galaxy workflows in workflow registries
•• IntermediateFAIR Using Galaxy and Managing your Data workflows -
ELIXIR TeSS
e-learning
Phylogenetic analysis for bacterial comparative genomics
• BeginnerEvolutionary biology Genomics Microbiology Phylogeny Evolution microgalaxy work-in-progress -
ELIXIR TeSS
e-learning
Bacterial genome quality control
• BeginnerGenomics Microbiology Genome Annotation microgalaxy work-in-progress -
ELIXIR TeSS
e-learning
Dataset construction for bacterial comparative genomics
• BeginnerGenomics Microbiology Genome Annotation microgalaxy work-in-progress -
ELIXIR TeSS
e-learning
Bacterial pangenomics
• BeginnerGenomics Microbiology Genome Annotation -
ELIXIR TeSS
e-learning
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data
• BeginnerMetagenomics Microbial ecology Genomics Microbiology Sequence analysis Mobile genetic elements Microbiome -
ELIXIR TeSS
e-learning
Calculating α and β diversity from microbiome taxonomic data
• BeginnerMetagenomics Microbial ecology Microbiome diversity metagenomics -
ELIXIR TeSS
e-learning
Quality and contamination control in bacterial isolate using Illumina MiSeq Data
• BeginnerSequence analysis Whole genome sequencing Genomics Microbiology Microbial ecology Sequence analysis bacteria illumina microgalaxy