Training materials
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ELIXIR TeSS
e-learning
Molecular formula assignment and mass recalibration with MFAssignR package
•• IntermediateMetabolomics Metabolomics exposomics gc-ms lc-ms metabolomics -
ELIXIR TeSS
e-learning
Voronoi segmentation
•• IntermediateImaging Image segmentation Imaging Multi-channel image Object counting Overlay Tessellation -
ELIXIR TeSS
e-learning
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy
• BeginnerImaging Image segmentation Imaging Parameter optimisation Validation -
ELIXIR TeSS
slides
Genome assembly and assembly QC - Introduction short version
• BeginnerSequence assembly Assembly -
ELIXIR TeSS
e-learning
Using BioImage.IO models for image analysis in Galaxy
•• IntermediateImaging Deep learning Image annotation Image segmentation Imaging -
ELIXIR TeSS
e-learning
Collaboration with JupyterGIS
• BeginnerClimate -
ELIXIR TeSS
e-learning
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants
• BeginnerSequence analysis Sequence analysis plants -
ELIXIR TeSS
e-learning
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines
• BeginnerImaging IDR dataset Imaging Overlay Rasterisation Spot detection -
ELIXIR TeSS
e-learning
Genome annotation with Braker3
•• IntermediateGenomics Sequence assembly Biodiversity Zoology Plant biology Braker3 Genome Annotation biodiversity eukaryota jbrowse1 -
ELIXIR TeSS
e-learning
Dataset construction for bacterial comparative genomics
• BeginnerGenomics Microbiology Genome Annotation microgalaxy work-in-progress