e-Learning
Scientific topics: Sequence assembly
and Contributors: Cristóbal Gallardo
and Resource type: e-learning
12 e-learning materials found
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e-learning
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition
• BeginnerMetagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis … -
e-learning
ERGA post-assembly QC
• BeginnerSequence assembly Genomics Biodiversity Assembly QC animals assembly biodiversity genome plants -
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Large genome assembly and polishing
• BeginnerSequence assembly Genomics Biodiversity Assembly assembly biodiversity nanopore plants polishing -
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Genome Assembly Quality Control
•• IntermediateSequence assembly Biodiversity Data quality management Assembly assembly biodiversity quality control -
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M. tuberculosis Variant Analysis
•• IntermediateGenetic variation Genomics Microbiology Sequence assembly Public health and epidemiology Infectious disease Variant Analysis microgalaxy one-health prokaryote … -
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Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)
• BeginnerSequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance Assembly amr assembly microgalaxy … -
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Chloroplast genome assembly
• BeginnerSequence assembly Assembly biodiversity jbrowse1 nanopore plants -
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Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step
•• IntermediateSequence assembly Genomics Biodiversity Assembly VGP biodiversity eukaryote pacbio -
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Genome assembly using PacBio data
•• IntermediateSequence assembly Genomics Biodiversity Assembly assembly biodiversity pacbio -
e-learning
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data
•• IntermediateSequence assembly Chromosome conformation capture Assembly VGP biodiversity eukaryote pacbio
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