Training materials
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Contributors: Pavankumar Videm
and Related resources: Associated Training Datasets
and Tools: annotatemyids
2 materials found
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Tool
- annotatemyids
- Galaxy53
- SCANPY11
- Falco6
- MultiQC5
- Workflow4Metabolomics5
- anndata5
- BEDTools4
- FastQC4
- MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4
- Trim Galore4
- xcms4
- Biopython3
- Cardinal3
- DESeq23
- DeepTools3
- DropletUtils3
- MACS3
- Salmon3
- ggplot23
- BWA2
- RSeQC2
- RStudio2
- SAMtools2
- STAR2
- Targetfinder.org2
- miRDeep22
- Alevin1
- BamTools1
- Bowtie 21
- FeatureCounts1
- GOEnrichment1
- GOseq1
- IDR1
- IsoformSwitchAnalyzeR1
- JBrowse 21
- MALDIquant1
- MEME1
- MFAssignR1
- Matchms1
- MethylDackel1
- Open Babel1
- PfamScan1
- R1
- SeqCode1
- Seurat1
- StringTie1
- UCSC Genome Browser Utilities1
- UMI-tools1
- blockbuster1
- compute_sequence_length1
- edgeR1
- epiScanpy1
- fastp1
- g:Profiler1
- gffcompare1
- gffread1
- msConvert1
- pathview1
- pyGenomeTracks1
- rnaQUAST1
- scp1
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Content provider
- GTN2
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Keyword
- Single Cell2
- deconvolution2
- transcriptomics2
- data management1
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Competency level
- Beginner2
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Licence
- Creative Commons Attribution 4.0 International2
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Target audience
- Students2
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Author
- Mehmet Tekman1
- Morgan Howells1
- Wendi Bacon1
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Contributor
- Pavankumar Videm
- Saskia Hiltemann4
- Björn Grüning3
- Helena Rasche3
- Wendi Bacon2
- Carlos Chee Mendonça1
- José Manuel Domínguez1
- Julia Jakiela1
- Linelle Abueg1
- Maria Doyle1
- Marisa Loach1
- Matti Hoch1
- Mehmet Tekman1
- Mira Kuntz1
- Morgan Howells1
- Nicola Soranzo1
- Pablo Moreno1
- Sanjay Kumar Srikakulam1
- Xavier Garnier1
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Resource type
- e-learning2
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Related resource
- Associated Training Datasets
- Associated Workflows3
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