Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • DNA variation11
    • Genetic variation11
    • Genomic variation11
    • Mutation11
    • Polymorphism11
    • Somatic mutations11
    • Antimicrobial stewardship5
    • Biological sequences5
    • Exomes5
    • Genome annotation5
    • Genomes5
    • Genomics5
    • Medical microbiology5
    • Microbial genetics5
    • Microbial physiology5
    • Microbial surveillance5
    • Microbiological surveillance5
    • Microbiology5
    • Molecular infection biology5
    • Molecular microbiology5
    • Personal genomics5
    • Sequence analysis5
    • Sequence databases5
    • Synthetic genomics5
    • Viral genomics5
    • Whole genomes5
    • Assembly4
    • Sequence assembly4
    • Biodiversity3
    • Communicable disease3
    • Comparative transcriptomics3
    • Computational ecology3
    • Ecoinformatics3
    • Ecological informatics3
    • Ecology3
    • Ecosystem science3
    • Epidemiology3
    • Infectious disease3
    • Public health3
    • Public health and epidemiology3
    • Transcriptome3
    • Transcriptomics3
    • Transmissible disease3
    • Community analysis2
    • De novo genome sequencing2
    • Environmental microbiology2
    • Epigenomics2
    • Evolution2
    • Evolutionary biology2
    • Genome sequencing2
    • Microbial ecology2
    • Microbiome2
    • Molecular community analysis2
    • WGS2
    • Whole genome resequencing2
    • Whole genome sequencing2
    • Bottom-up proteomics1
    • DNA polymorphism1
    • Discovery proteomics1
    • Disease1
    • MS-based targeted proteomics1
    • MS-based untargeted proteomics1
    • Metagenomics1
    • Metaproteomics1
    • Microsatellites1
    • Pathology1
    • Peptide identification1
    • Phylogenetic clocks1
    • Phylogenetic dating1
    • Phylogenetic simulation1
    • Phylogenetic stratigraphy1
    • Phylogeny1
    • Phylogeny reconstruction1
    • Protein and peptide identification1
    • Proteomics1
    • Quantitative proteomics1
    • RFLP1
    • SNP1
    • Shotgun metagenomics1
    • Single nucleotide polymorphism1
    • Targeted proteomics1
    • Taxonomy1
    • Top-down proteomics1
    • VNTR1
    • Variable number of tandem repeat polymorphism1
    • snps1
    • Show N_FILTERS more
    • Tool
    • Galaxy33
    • SAMtools11
    • BWA10
    • Falco10
    • fastp9
    • MultiQC8
    • BCFtools7
    • FastQC7
    • Trimmomatic5
    • seqtk4
    • BEDTools3
    • BamTools3
    • FreeBayes3
    • GEMINI3
    • MAFFT3
    • NanoPlot3
    • QualiMap3
    • RSeQC3
    • SRA Software Toolkit3
    • ggplot23
    • BLAST2
    • Bandage2
    • COMBAT-TB Workbench2
    • Cutadapt2
    • DeepTools2
    • IsoformSwitchAnalyzeR2
    • PfamScan2
    • STAR2
    • Stacks2
    • StringTie2
    • Trim Galore2
    • compute_sequence_length2
    • gffcompare2
    • gffread2
    • iVar2
    • lofreq2
    • pyGenomeTracks2
    • rnaQUAST2
    • snippy2
    • snpEff2
    • ABRicate1
    • Bowtie 21
    • Bracken1
    • Bwa-mem21
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • DESeq21
    • EGA1
    • FASTQE1
    • FASTX-Toolkit1
    • FREEC1
    • FastTree1
    • FeatureCounts1
    • Flye1
    • GOseq1
    • Galactic Circos1
    • IDR1
    • JBrowse1
    • Jvarkit1
    • KrakenTools1
    • MACS1
    • MEME1
    • MLST1
    • MSstats1
    • MaxQuant1
    • Medaka1
    • MethylDackel1
    • Minimap21
    • NCBI Resources1
    • Newick Utilities1
    • Nextclade1
    • QUAST1
    • R1
    • RAxML1
    • Recentrifuge1
    • SeqCode1
    • UCSC Genome Browser Utilities1
    • Unicycler1
    • VAPOR1
    • VarScan1
    • Vcflib1
    • iqtree1
    • kraken21
    • pangolin1
    • pathview1
    • pycoQC1
    • shovill1
    • taxonomy_krona_chart1
    • tb-profiler1
    • varVAMP1
    • Show N_FILTERS more
    • Content provider
    • GTN36
    • Show N_FILTERS more
    • Keyword
    • Variant Analysis11
    • one-health7
    • microgalaxy6
    • covid195
    • virology5
    • Sequence analysis4
    • biodiversity4
    • Ecology3
    • Transcriptomics3
    • cyoa3
    • prokaryote3
    • Assembly2
    • Contributing to the Galaxy Training Material2
    • EBV dataset2
    • EBV workflow2
    • Epigenetics2
    • Evolution2
    • Galaxy Server administration2
    • Introduction to Galaxy Analyses2
    • RAD-seq2
    • deutsch2
    • español2
    • genetic composition EBV class2
    • git-gat2
    • illumina2
    • italiano2
    • DDA1
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • Proteomics1
    • QC1
    • TMT1
    • Using Galaxy and Managing your Data1
    • alternative splicing1
    • ansible1
    • assembly1
    • bacteria1
    • bulk1
    • collections1
    • drosophila1
    • galaxy-intro1
    • isoform switching1
    • phylogenetics1
    • rna-seq1
    • species population EBV class1
    • species populations EBV class1
    • storage1
    • tools1
    • tuberculosis1
    • variant-analysis1
    • workflows1
    • Show N_FILTERS more
    • Competency level
    • Beginner26
    • Intermediate7
    • Advanced3
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International36
    • Show N_FILTERS more
    • Target audience
    • Students32
    • Galaxy Administrators2
    • Instructors2
    • Show N_FILTERS more
    • Author
    • Wolfgang Maier12
    • Bérénice Batut9
    • Helena Rasche5
    • Saskia Hiltemann5
    • Anton Nekrutenko3
    • Björn Grüning3
    • Lucille Delisle3
    • Nicola Soranzo3
    • Yvan Le Bras3
    • Anika Erxleben2
    • Christoph Stritt2
    • Clemens Blank2
    • Cristóbal Gallardo2
    • Daniel Blankenberg2
    • Daniela Brites2
    • Dave Clements2
    • Galo A. Goig2
    • Maria Doyle2
    • Marius van den Beek2
    • Pavankumar Videm2
    • Peter van Heusden2
    • Verena Moosmann2
    • Alexandre Cormier1
    • Anne Pajon1
    • Anthony Bretaudeau1
    • Bazante Sanders1
    • Cameron Hyde1
    • Clea Siguret1
    • David Salgado1
    • Devon Ryan1
    • Elischa Berger1
    • Engy Nasr1
    • Erwan Corre1
    • Florian Heyl1
    • Gildas Le Corguillé1
    • Jasper Ouwerkerk1
    • Joachim Wolff1
    • Jörg Wennmann1
    • Katarzyna Kamieniecka1
    • Khaled Jum'ah1
    • Klemens Fröhlich1
    • Krzysztof Poterlowicz1
    • Laura Leroi1
    • Mallory Freeberg1
    • Martin Čech1
    • Matthias Fahrner1
    • Melanie Föll1
    • Mo Heydarian1
    • Najat Amoukou1
    • Paul Zierep1
    • Simon Bray1
    • Simon Gladman1
    • Stéphanie Robin1
    • Thoba Lose1
    • Tomas Klingström1
    • Torsten Houwaart1
    • Show N_FILTERS more
    • Contributor
    • Wolfgang Maier
    • Saskia Hiltemann598
    • Helena Rasche504
    • Björn Grüning433
    • Bérénice Batut261
    • Nicola Soranzo180
    • Martin Čech129
    • Anthony Bretaudeau108
    • Cristóbal Gallardo104
    • Niall Beard90
    • Toby Hodges83
    • Wendi Bacon78
    • Nate Coraor70
    • François Michonneau68
    • Armin Dadras66
    • Pavankumar Videm66
    • Gildas Le Corguillé63
    • Erin Becker62
    • Marius van den Beek62
    • William Durand59
    • Zhian N. Kamvar59
    • Mine Cetinkaya-Rundel56
    • Robert Andrews55
    • Simon Gladman54
    • Katrin Leinweber53
    • Raniere Silva53
    • Tracy Teal53
    • W. Trevor King51
    • maneesha51
    • Andy Boughton50
    • Beatriz Serrano-Solano48
    • Teresa Müller48
    • Katie Anne Mills47
    • Maxim Belkin47
    • Lucille Delisle46
    • Mehmet Tekman46
    • Yvan Le Bras46
    • Canadian Bioinformatics Workshops43
    • David Pérez-Suárez43
    • Gabriel A. Devenyi43
    • Munazah Andrabi43
    • Abby Cabunoc Mayes41
    • EvanWill41
    • Ian Lee41
    • Jon Pipitone41
    • Jonah Duckles41
    • Michael Hansen41
    • Piotr Banaszkiewicz41
    • Brandon Curtis40
    • David Mawdsley40
    • Greg Wilson40
    • Jemma Stachelek40
    • Remi Rampin40
    • Allen Lee39
    • Andrew Sanchez39
    • Michael R. Crusoe39
    • James Allen38
    • Jeff Oliver38
    • Joel Nothman38
    • Nick Young38
    • Rémi Emonet38
    • naught10138
    • Marie Josse37
    • Rayna M Harris37
    • William L. Close37
    • Melanie Föll35
    • Sarah Brown35
    • Anup Kumar34
    • Gerard Capes33
    • Maria Doyle33
    • Renato Alves31
    • trk30
    • Ana Conrado29
    • Stephan Druskat29
    • Christina K.28
    • K.E. Koziar28
    • Simon Bray28
    • Subina Mehta28
    • Alex Whan27
    • Anne Fouilloux26
    • Paula Andrea Martinez26
    • Michael Joseph25
    • Anthony Gitter24
    • Geert van Geest24
    • João Rodrigues24
    • Peter van Heusden24
    • Donny Vrins23
    • Robert Davey22
    • Sarah Stevens22
    • Tristan Reynolds21
    • Wolmar Nyberg Åkerström21
    • actions-user21
    • Henry Schreiner20
    • Hilmar Lapp20
    • Julia Jakiela20
    • Leonid Kostrykin20
    • Bazante Sanders19
    • The Gulbenkian Training Programme in Bioinformatics19
    • Anton Nekrutenko18
    • Elin Kronander18
    • Show N_FILTERS more
    • Resource type
    • e-learning35
    • slides1
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows30
    • Associated Training Datasets24
    • Show N_FILTERS more
    • Collection
    • ELIXIR hCNV community - collection of courses and materials.1
    • ELIXIR Federated Human Data Community1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Hide archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Contributors: Wolfgang Maier

and Include archived: true

36 materials found
  • ELIXIR TeSS

    e-learning

    Removal of human reads from SARS-CoV-2 sequencing data

    •• Intermediate
    Sequence analysis Sequence analysis covid19
  • ELIXIR TeSS

    e-learning

    RAD-Seq de-novo data analysis

    • Beginner
    Ecology Biodiversity EBV dataset EBV workflow Ecology RAD-seq biodiversity genetic composition EBV class species populations EBV class
  • ELIXIR TeSS

    e-learning

    RAD-Seq Reference-based data analysis

    • Beginner
    Ecology Biodiversity EBV dataset EBV workflow Ecology RAD-seq biodiversity genetic composition EBV class species population EBV class
  • ELIXIR TeSS

    e-learning

    NGS data logistics

    • Beginner
    Introduction to Galaxy Analyses
  • ELIXIR TeSS

    e-learning

    Galaxy Basics for genomics

    • Beginner
    Introduction to Galaxy Analyses galaxy-intro
  • ELIXIR TeSS

    e-learning

    Quality Control

    • Beginner
    Sequence analysis Sequence analysis deutsch español italiano
  • 1
  • 2
  • 3
  • 4
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.