Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Assembly
    • DNA variation3
    • Genetic variation3
    • Genomic variation3
    • Mutation3
    • Polymorphism3
    • Sequence assembly3
    • Somatic mutations3
    • Comparative transcriptomics2
    • Epidemiology2
    • Public health2
    • Public health and epidemiology2
    • Transcriptome2
    • Transcriptomics2
    • Antimicrobial stewardship1
    • Biological sequences1
    • Community analysis1
    • De novo genome sequencing1
    • Disease1
    • Environmental microbiology1
    • Exomes1
    • Genome annotation1
    • Genome sequencing1
    • Genomes1
    • Genomics1
    • Medical microbiology1
    • Metagenomics1
    • Microbial ecology1
    • Microbial genetics1
    • Microbial physiology1
    • Microbial surveillance1
    • Microbiological surveillance1
    • Microbiology1
    • Microbiome1
    • Molecular community analysis1
    • Molecular infection biology1
    • Molecular microbiology1
    • Pathology1
    • Personal genomics1
    • Sequence analysis1
    • Sequence databases1
    • Shotgun metagenomics1
    • Synthetic genomics1
    • Taxonomy1
    • Viral genomics1
    • WGS1
    • Whole genome resequencing1
    • Whole genome sequencing1
    • Whole genomes1
    • Show N_FILTERS more
    • Tool
    • fastp
    • Galaxy4
    • BCFtools2
    • Bandage2
    • FastQC2
    • NanoPlot2
    • SAMtools2
    • ABRicate1
    • BEDTools1
    • BamTools1
    • COMBAT-TB Workbench1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • Falco1
    • FastTree1
    • Flye1
    • JBrowse1
    • Jvarkit1
    • KrakenTools1
    • MLST1
    • Medaka1
    • Minimap21
    • MultiQC1
    • Newick Utilities1
    • QUAST1
    • QualiMap1
    • Unicycler1
    • ggplot21
    • kraken21
    • seqtk1
    • shovill1
    • snippy1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • GTN3
    • Show N_FILTERS more
    • Keyword
    • Assembly2
    • microgalaxy2
    • Heatmap1
    • Microbiome1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • assembly1
    • biodiversity1
    • covid191
    • cyoa1
    • illumina1
    • Show N_FILTERS more
    • Competency level
    • Beginner2
    • Intermediate1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International3
    • Show N_FILTERS more
    • Target audience
    • Students3
    • Show N_FILTERS more
    • Author
    • Bérénice Batut2
    • Bazante Sanders1
    • Engy Nasr1
    • Paul Zierep1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Wolfgang Maier
    • Helena Rasche5
    • Saskia Hiltemann5
    • Björn Grüning4
    • Bérénice Batut4
    • Cristóbal Gallardo4
    • Deepti Varshney3
    • Paul Zierep2
    • Anna Syme1
    • Anthony Bretaudeau1
    • Bazante Sanders1
    • Engy Nasr1
    • Hans-Rudolf Hotz1
    • Miaomiao Zhou1
    • Nate Coraor1
    • Simon Gladman1
    • Teresa Müller1
    • Tristan Reynolds1
    • Verena Moosmann1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning3
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets3
    • Associated Workflows3
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Scientific topics: Assembly

and Tools: fastp

and Contributors: Wolfgang Maier

3 materials found
  • ELIXIR TeSS

    e-learning

    Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

    • Beginner
    Metagenomics Microbial ecology Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis Heatmap Microbiome Nanopore data analysis …
  • ELIXIR TeSS

    e-learning

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    •• Intermediate
    Sequence assembly Assembly biodiversity covid19
  • ELIXIR TeSS

    e-learning

    Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

    • Beginner
    Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Assembly assembly illumina microgalaxy
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.