Training materials
Competency level: Intermediate
and User: scraper
and Licence: Creative Commons Attribution 4.0 International
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e-learning
Genomic Data Visualisation with JBrowse2
•• IntermediateVisualisation gmod jbrowse2 -
e-learning
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK
•• IntermediateStatistics and probability GLEAM HANCOCK Dataset Multimodal Learning Recurrence Prediction Statistics and machine learning -
hands-on tutorial
Assess protein dynamics & post-translational modifications through ELIXIR Belgium Node services: B2BTools & Scop3P
•• IntermediatePost-translational modification site prediction Protein structure Protein property AlphaFold B2BTools Biophysical profiles Post-translational modification Scop3P -
hands-on tutorial
Nextflow for reproducible and automated data analysis
•• IntermediateWorkflow Software engineering Computing environment Nextflow Reproducible data analysis Workflow -
hands-on tutorial
Containerise data analysis with Docker and Apptainer
•• IntermediateDocker image Software engineering Apptainer Computing environment Container Docker -
e-learning
Content Tracking and Verification in Galaxy Workflows with ISCC-SUM
•• IntermediateImaging Data handling Data management Data sharing Imaging Validation -
e-learning
Execute a BiaPy workflow in Galaxy
•• IntermediateImaging 3D image Conversion Deep learning Image annotation Image segmentation Imaging Overlay Volume rendering -
e-learning
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000
•• IntermediateStatistics and probability Deep Learning HAM10000 Dataset Image Classification Image Learner Skin Lesion Classification Statistics and machine learning -
e-learning
Galaxy Tabular Learner - Building a Model using Chowell clinical data
•• IntermediateStatistics and probability LORIS Score Model Machine Learning Statistics and machine learning Tabular Learner -
e-learning
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads
•• IntermediateMetagenomics Microbial ecology Sequence assembly Microbiome assembly binning metagenomics microgalaxy