- Home
- Materials
Filter
Sort
-
-
Filter Clear filters
-
-
Scientific topic
- Algorithms20
- Computer programming20
- Data structures20
- Programming languages20
- Software development20
- Software engineering20
- Bayesian methods16
- Biostatistics16
- Descriptive statistics16
- Gaussian processes16
- Inferential statistics16
- Markov processes16
- Multivariate statistics16
- Probabilistic graphical model16
- Probability16
- Statistics16
- Statistics and probability16
- Bottom-up proteomics14
- Discovery proteomics14
- MS-based targeted proteomics14
- MS-based untargeted proteomics14
- Metaproteomics14
- Peptide identification14
- Protein and peptide identification14
- Proteomics14
- Quantitative proteomics14
- Targeted proteomics14
- Top-down proteomics14
- Exomes13
- Genome annotation13
- Genomes13
- Genomics13
- Personal genomics13
- Synthetic genomics13
- Viral genomics13
- Whole genomes13
- Diffraction experiment12
- Imaging12
- Microscopy12
- Microscopy imaging12
- Optical super resolution microscopy12
- Photonic force microscopy12
- Photonic microscopy12
- Assembly11
- Sequence assembly11
- Biodiversity7
- Computational chemistry7
- Community analysis4
- Comparative transcriptomics4
- DNA variation4
- Environmental microbiology4
- Exometabolomics4
- Genetic variation4
- Genomic variation4
- LC-MS-based metabolomics4
- MS-based metabolomics4
- MS-based targeted metabolomics4
- MS-based untargeted metabolomics4
- Mass spectrometry-based metabolomics4
- Metabolites4
- Metabolome4
- Metabolomics4
- Metabonomics4
- Metagenomics4
- Microbial ecology4
- Microbiome4
- Molecular community analysis4
- Mutation4
- NMR-based metabolomics4
- Polymorphism4
- Shotgun metagenomics4
- Somatic mutations4
- Transcriptome4
- Transcriptomics4
- Antimicrobial stewardship3
- Bioinformatics3
- Medical microbiology3
- Microbial genetics3
- Microbial physiology3
- Microbial surveillance3
- Microbiological surveillance3
- Microbiology3
- Molecular infection biology3
- Molecular microbiology3
- Protein structure3
- Proteogenomics3
- Taxonomy3
- Active learning2
- Animal2
- Animal biology2
- Animal genetics2
- Animal physiology2
- Animals2
- Biological sequences2
- Botany2
- Communicable disease2
- DNA structure prediction2
- Data rendering2
- Data visualisation2
- Ensembl learning2
- Show N_FILTERS more
-
-
-
Tool
- Galaxy78
- BUSCO7
- JBrowse7
- Galaxy Image Analysis6
- scikit-image6
- BWA5
- QUAST4
- SAMtools4
- gffread4
- BCFtools3
- OMArk3
- Open Babel3
- RDKit3
- SRA Software Toolkit3
- STAR3
- ggplot23
- msConvert3
- seqtk3
- Apollo2
- COMBAT-TB Workbench2
- CellProfiler2
- Cutadapt2
- FastQC2
- Galactic Circos2
- HISAT22
- Helixer2
- MAFFT2
- MaxQuant2
- Merqury2
- MultiQC2
- QualiMap2
- SCANPY2
- The Protein Data Bank (PDB)2
- Trimmomatic2
- UniProt2
- Workflow4Metabolomics2
- compute_sequence_length2
- dRep2
- fastp2
- iqtree2
- metaQuantome2
- snippy2
- xcms2
- AutoDock Vina1
- BEDTools1
- BLAST1
- Bakta1
- BamTools1
- Bio3D1
- Biopython1
- Bwa-mem21
- CONCOCT1
- Cardinal1
- ChEMBL1
- CheckM1
- ChemicalToolbox1
- Circos1
- Data Stewardship Wizard1
- DeepTools1
- European Nucleotide Archive (ENA)1
- FEELnc1
- Falco1
- FastTree1
- FeatureCounts1
- FlashLFQ1
- Flye1
- Fpocket1
- FreeBayes1
- GAEVAL1
- GOseq1
- GenomeScope 2.01
- Gromacs1
- InterProScan (EBI)1
- Jvarkit1
- MALDIquant1
- MDAnalysis1
- MFAssignR1
- MSstats1
- MSstatsTMT1
- Matchms1
- MaxBin1
- MetaBAT 21
- Minimap21
- NCBI Resources1
- NanoPlot1
- Newick Utilities1
- Nextclade1
- PyTorch1
- RSeQC1
- RStudio1
- SALSA1
- StringTie1
- SuCOS1
- Trim Galore1
- Unicycler1
- Unipept1
- VAPOR1
- Vcflib1
- WoLF PSORT1
- annotatemyids1
- Show N_FILTERS more
-
-
-
Keyword
- jupyter-notebook23
- Foundations of Data Science18
- Statistics and machine learning15
- Proteomics14
- Imaging12
- biodiversity11
- Genome Annotation9
- ai-ml9
- elixir9
- NEPHEWS project8
- jbrowse18
- microgalaxy8
- Computational chemistry7
- Image segmentation7
- Python7
- Using Galaxy and Managing your Data7
- Assembly6
- eukaryote6
- gmod6
- training6
- Large Language Model5
- covid195
- life sciences5
- one-health5
- CERIC4
- Central European Research Infrastructure Consortium4
- Heritage Science4
- Materials Science4
- Metabolomics4
- Multi-channel image4
- PaNOSC4
- SQL4
- Variant Analysis4
- Visualisation4
- expands4
- metabolomics4
- work-in-progress4
- workflows4
- DIA3
- Deep learning3
- FAIR3
- Image annotation3
- Object feature extraction3
- Overlay3
- Single Cell3
- assembly3
- battery research3
- biostatistics3
- data analysis3
- eukaryota3
- pacbio3
- programming3
- prokaryote3
- proteogenomics3
- wp3-ExPaNDS3
- 10x2
- AlphaFold2
- Beamtime access2
- Braker32
- COVID research2
- Computing environment2
- Conversion2
- Data2
- Data handling2
- Data management2
- Data sharing2
- Deep Learning2
- Evolution2
- FAIR Data2
- Galaxy Server administration2
- Image Learner2
- Isolated object tracking2
- Large-scale research facilities2
- Microbiome2
- NMR2
- Neutron science2
- R2
- ROI selection2
- Research infrastructures2
- Small Angle Neutron Scattering2
- Structure prediction2
- Transcriptomics2
- VGP2
- Virtual training2
- apollo22
- bash2
- binning2
- collections2
- cyoa2
- data visualisation2
- drug delivery2
- epigenetics2
- exposomics2
- game2
- gc-ms2
- high-performance2
- http://edamontology.org/topic_33162
- human2
- imaging2
- interactive-tools2
- Show N_FILTERS more
-
-
-
Competency level
- Intermediate
- Not specified8826
- Beginner662
- Advanced21
- Show N_FILTERS more
-
-
-
Licence
- Creative Commons Attribution 4.0 International125
- License Not Specified49
- MIT License3
- Creative Commons Attribution Non Commercial Share Alike 4.0 International2
- BSD 2-Clause "Simplified" License1
- Creative Commons Attribution Non Commercial 4.0 International1
- Creative Commons Attribution Non Commercial No Derivatives 4.0 International1
- Creative Commons Attribution Share Alike 4.0 International1
- Show N_FILTERS more
-
-
-
Target audience
- Students112
- scientists12
- PhD students10
- researchers10
- beamtime users, researchers, PhD students8
- Life scientists with programming skills5
- PaN Community5
- ExPaNDS and PaNOSC project members4
- Materials scientists4
- biologists4
- chemists4
- research data scientist3
- Galaxy Administrators2
- PaN users2
- Scientific community2
- beamline users2
- data curator2
- engineers2
- life scientists2
- physicists2
- researchers in energy materials2
- Bioinformatician1
- Life scientists1
- Life scientists, bioinformaticians and researchers who are familiar with writing Python code and core Python elements, and would like to use it in their daily data exploration and visualization tasks.1
- Photon Community1
- Researchers1
- archaeologist1
- archaeologists1
- biochemists1
- data managers1
- data stewards1
- experts / scientists in heritage sciences1
- facility staff1
- graduate students1
- material scientists1
- medical researchers1
- post-docs1
- research data engineer1
- Show N_FILTERS more
-
-
-
Author
- Helena Rasche23
- SIB Swiss Institute of Bioinformatics13
- Anthony Bretaudeau11
- The Carpentries11
- Bérénice Batut9
- Wandrille Duchemin8
- Simon Bray7
- Fotis E. Psomopoulos6
- Pratik Jagtap6
- Subina Mehta6
- Timothy J. Griffin6
- Avans Hogeschool5
- Melanie Föll5
- Praveen Kumar5
- Raphael Mourad5
- Anton Nekrutenko4
- Bazante Sanders4
- Delphine Lariviere4
- Jeremy Goecks4
- Junhao Qiu4
- Leonid Kostrykin4
- Matthias Fahrner4
- Paulo Cilas Morais Lyra Junior4
- Romane LIBOUBAN4
- Saskia Hiltemann4
- Wolfgang Maier4
- Alyssa Pybus3
- Anne Fouilloux3
- Christopher Barnett3
- Cristóbal Gallardo3
- Diana Chiang Jurado3
- Donny Vrins3
- Emma Leith3
- James Johnson3
- Marie Crane3
- Markus Müller3
- Nadia Goué3
- Ray Sajulga3
- Riccardo Massei3
- Stéphanie Robin3
- Thuong Van Du Tran3
- Alex Mahmoud2
- Alex Ostrovsky2
- Alexandre Cormier2
- Beatriz Serrano-Solano2
- Björn Grüning2
- Brandon Pickett2
- Daniel Blankenberg2
- Donat Agosti2
- Enis Afgan2
- Erwan Corre2
- Florian Christoph Sigloch2
- Geert van Geest2
- Helge Hecht2
- Janick Mathys2
- Jayadev Joshi2
- Jean-Karim Hériché2
- John Davis2
- Julia Giora2
- Khai Van Dang2
- Laura Leroi2
- Linelle Abueg2
- Maria Christina Maniou2
- Marius van den Beek2
- Nuwan Goonasekera2
- Pablo Moreno2
- Plazi Verein2
- Ralf Gabriels2
- Robin Engler2
- Simon Gladman2
- Tharindu Senapathi2
- Timon Schlegel2
- Yi Sun2
- Adrián Díaz1
- Ahmed Mahfouz1
- Alexander Botzki1
- Alexander Botzki | https://orcid.org/0000-0001-6691-42331
- Allison Creason1
- Allissa Dillman1
- Anastassia Vorebieva1
- Andrei Sokolovskii1
- Anna Schaar1
- Anna Syme1
- Arif ul Maula Khan1
- Aurélien F. A. Moumbock1
- Baker Matthew1
- Bert Droesbeke1
- Boris Depoortere1
- Bruna Piereck Moura1
- Bräunlich Gerhard1
- Cameron Watson1
- Christoph Stritt1
- Claire Walsh1
- Clea Siguret1
- Daniel Franco Barranco1
- Daniela Brites1
- Daniela Schneider1
- Daniele Silvestro1
- Egon Willighagen1
- Emanuel Schmid1
- Show N_FILTERS more
-
-
-
Contributor
- Saskia Hiltemann98
- Björn Grüning76
- Helena Rasche75
- Bérénice Batut40
- Anthony Bretaudeau26
- Beatriz Serrano-Solano18
- Melanie Föll16
- Marius van den Beek14
- Anup Kumar13
- Cristóbal Gallardo12
- Leonid Kostrykin12
- Peter van Heusden12
- Simon Bray12
- Subina Mehta11
- Donny Vrins9
- Martin Čech8
- Pavankumar Videm8
- Nicola Soranzo7
- Wolfgang Maier7
- Diana Chiang Jurado6
- Teresa Müller6
- Wendi Bacon6
- Anton Nekrutenko5
- Armin Dadras5
- Bazante Sanders5
- Christopher Barnett5
- Gildas Le Corguillé5
- Stéphanie Robin5
- Wandrille Duchemin5
- olisand5
- Delphine Lariviere4
- Linelle Abueg4
- Paulo Cilas Morais Lyra Junior4
- VIB4
- Deepti Varshney3
- Mallory Freeberg3
- Mélanie Petera3
- Niall Beard3
- Romane LIBOUBAN3
- William Durand3
- Alexandre Cormier2
- Anna Syme2
- Anne Fouilloux2
- Clemens Blank2
- Enis Afgan2
- Fabio Cumbo2
- Florian Christoph Sigloch2
- Jasper Ouwerkerk2
- Jayadev Joshi2
- Lucille Delisle2
- Maria Christina Maniou2
- Natalie Whitaker-Allen2
- Nate Coraor2
- Paul Zierep2
- Riccardo Massei2
- Solenne Correard2
- Timon Schlegel2
- Tristan Reynolds2
- Tuur Muyldermans2
- Adam Taranto1
- Alexander Botzki1
- Amirhossein Naghsh Nilchi1
- Aurélien F. A. Moumbock1
- Aysam Guerler1
- Bert Droesbeke1
- Cameron Watson1
- Catherine Bromhead1
- Christoph Stritt1
- Clea Siguret1
- Daniel Blankenberg1
- Daniel Franco Barranco1
- Daniela Schneider1
- Dave Clements1
- David López1
- David Stansby1
- Erwan Corre1
- Even Moa Myklebust1
- Felicitas Kindel1
- Florian Heyl1
- Galo A. Goig1
- Giuseppe Defazio1
- Guillaume Gaisne1
- Helge Hecht1
- James Johnson1
- John Chilton1
- Jonathan Kreplak1
- José Manuel Domínguez1
- Junhao Qiu1
- Jörg Wennmann1
- Kenneth Hoste1
- Kristina Gomoryova1
- Laura Leroi1
- Maarten Paul1
- Maria Arrate Munoz Barrutia1
- Maria Doyle1
- Matej Troják1
- Matti Hoch1
- Mehmet Tekman1
- Melissa Burke1
- Mira Kuntz1
- Show N_FILTERS more
-
-
-
Related resource
- Associated Training Datasets66
- Associated Workflows66
- Jupyter Notebook (with Solutions)23
- Jupyter Notebook (without Solutions)23
- PaNET on BioPortal1
- PaNET on GitHub1
- Quarto/RMarkdown Notebook1
- Reference search-api integration1
- SciCat deployment example1
- SciCat search-api code integration example1
- Training workflow1
- pan-ontologies-api requirements1
- Show N_FILTERS more
-
-
-
Status
- Active8
- Show N_FILTERS more
-
- Show materials from all spaces
- Show disabled materials
- Show materials with broken links
- Show archived materials