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- Scientific topic
- Genome annotation
- Data management254
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- Exomes203
- Genomes203
- Genomics203
- Personal genomics203
- Synthetic genomics203
- Viral genomics203
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- FAIR data196
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- WTSS126
- Whole transcriptome shotgun sequencing126
- miRNA-seq126
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- Chromosome walking106
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- DNA-Seq106
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- Panels106
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- Shotgun metagenomics81
- Biodiversity73
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- Discovery proteomics63
- MS-based targeted proteomics63
- MS-based untargeted proteomics63
- Metaproteomics63
- Peptide identification63
- Protein and peptide identification63
- Proteomics63
- Quantitative proteomics63
- Targeted proteomics63
- Top-down proteomics63
- Single-cell genomics60
- Single-cell sequencing60
- Antimicrobial stewardship56
- Medical microbiology56
- Microbial genetics56
- Microbial physiology56
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- Operation
- Data handling1
- Database retrieval1
- File handling1
- File processing1
- Functional genome annotation1
- Genome annotation1
- Metagenome annotation1
- Processing1
- Query1
- Query and retrieval1
- Report handling1
- Sequence classification1
- Structural genome annotation1
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- Galaxy47
- JBrowse13
- BUSCO8
- FastQC6
- QUAST5
- Bandage4
- Minimap24
- gffread4
- Apollo3
- BEDTools3
- Bwa-mem23
- Cutadapt3
- Diamond3
- Flye3
- GenomeScope 2.03
- MultiQC3
- OMArk3
- STAR3
- gfastats3
- snippy3
- BCFtools2
- BLAST2
- Bakta2
- Bowtie2
- Bracken2
- COMBAT-TB Workbench2
- Clustal 1.8 (Clustal W, Clustal X)2
- DeepTools2
- Falco2
- GECKO2
- Helixer2
- InterProScan (EBI)2
- MAGeCK2
- Merqury2
- NanoPlot2
- Recentrifuge2
- SAMtools2
- TRANSIT2
- eggNOG-mapper v22
- fastp2
- tbl2gff32
- AUGUSTUS1
- BWA1
- BamTools1
- BridgeDb1
- CheckM1
- Circos1
- Data Stewardship Wizard1
- FEELnc1
- FastTree1
- Filtlong1
- FreeBayes1
- GAEVAL1
- Galactic Circos1
- ISEScan1
- Integron Finder1
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- Medaka1
- NCBI Datasets1
- NCBI Resources1
- PASTEClassifier1
- PPanGGOLiN1
- PlasmidFinder1
- Polypolish1
- QualiMap1
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- RDMkit1
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- REXdb1
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- RapidNJ1
- RepeatMasker1
- RepeatModeler1
- Roary1
- SALSA1
- SNAP1
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- Smudgeplots1
- Trimmomatic1
- UCSC Genome Browser1
- Unicycler1
- Vcflib1
- ViralZone1
- antiSMASH1
- bx-python1
- chemfp1
- compute_sequence_length1
- dRep1
- funannotate1
- ggplot21
- kraken21
- orfipy1
- purge_dups1
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- staramr1
- tb-profiler1
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- European Nucleotide Archive1
- FAIRsharing1
- Genomics England | PanelApp1
- RDA DMP Common Standard for Machine-Actionable Data Management Plans1
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- Glittr.org86
- ERGA Knowledge Hub53
- GTN50
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- Department of Bioinformatics - BiGCaT, Maastricht University1
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- IFB French Institute of Bioinformatics1
- SIB Swiss Institute of Bioinformatics1
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- Keyword
- Genomics125
- Next generation sequencing50
- Genome annotation33
- Genome Annotation31
- Variant analysis30
- Genome assembly27
- RNA-seq24
- Transcriptomics20
- microgalaxy20
- R19
- biodiversity16
- Long read sequencing15
- prokaryote15
- Comparative genomics14
- Unix/Linux14
- jbrowse113
- Assembly11
- gmod11
- General10
- Data visualization9
- eukaryote9
- Epigenetics8
- Galaxy8
- Metagenomics8
- ATAC-seq6
- Data management6
- Epidemiology6
- High performance computing6
- Population genetics6
- Single-cell sequencing6
- Microbiology5
- Quality Control5
- Statistics5
- assembly5
- bacteria5
- illumina5
- work-in-progress5
- Assembly Evaluation4
- ChIP-seq4
- Cloud computing4
- Database Management4
- EeLP4
- Version control4
- eLearning4
- one-health4
- Evolution3
- FAIR data3
- Machine learning3
- Multiomics3
- Nextflow3
- Python3
- Reproducibility3
- Variant Analysis3
- apollo23
- bioinformatics3
- essential genes3
- eukaryota3
- plants3
- Annotation2
- Artificial intelligence2
- Braker32
- Command line2
- Data analysis2
- Enrichment analysis2
- FEGA2
- Federated EGA2
- Functional Genomics2
- HPC2
- Ontology2
- Pathways and Networks2
- Phylogenetics / Phylogenomics2
- Shell2
- Singularity2
- Workflows2
- amr2
- evolution2
- genomics2
- maker2
- nanopore2
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- tnseq2
- transcriptomics2
- RNA-Seq1
- API1
- Amazon Web Services1
- Assembly Curation1
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- Bioinformatics1
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- CRISPR1
- CWL1
- ChIP-Seq1
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- Data Analysis1
- Data Life Cycle1
- Data Management Plan1
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- Not specified163
- Beginner47
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- Creative Commons Zero v1.0 Universal4
- Creative Commons Attribution Share Alike 4.0 International2
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- Target audience
- Students52
- Researchers6
- Clinicians5
- PhD students5
- Biologists4
- Bioinformatician3
- Bioinformaticians2
- Clinical Scientists2
- Graduate students2
- Life Science Researchers2
- PhD Students2
- life scientists2
- Bioinformatician, Bioanalysts1
- Biologists with little or no prior computational experience1
- Biologists, Genomicists, Computer Scientists1
- Data Access Committeses from the EGA1
- Data Managers1
- Data Scientists1
- Data stewards1
- Life Scientists1
- Master students1
- Microbiologists1
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- Post docs1
- Postgraduate students1
- Principal Investigators1
- Principal Investigators (PIs)1
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- Researchers and bioinformaticians in other projects interested in depositiong data at the EGA1
- Researchers and bioinformaticians involved in the VEIS project1
- Scientists1
- Students, postdocs, and researchers, from any scientific environment (academia, facilities, companies, etc.) interested in viral data, as well as anyone looking for virion and viral genome images for use in teaching or publications.1
- beginner bioinformaticians1
- clinicians and informaticians interested in cancer genetics1
- data curators1
- genomics researchers1
- plant researchers1
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- Author
- Anthony Bretaudeau13
- Bérénice Batut12
- Delphine Lariviere8
- Data Carpentry6
- bioinformatics.ca6
- Anna Syme5
- Anton Nekrutenko5
- Simon Gladman5
- Helena Rasche4
- Hélène Chiapello4
- SIB Swiss Institute of Bioinformatics4
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- Valentin Loux4
- BU-ISCIII3
- Bazante Sanders3
- Canadian Bioinformatics Workshops3
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- Romane LIBOUBAN3
- Stéphanie Robin3
- Torsten Seemann3
- Alex Ostrovsky2
- Alexandre Cormier2
- Annabel Cansdale2
- Bioinformatics, Rockefeller University2
- Boas Pucker2
- Christoph Stritt2
- Cristóbal Gallardo2
- Daniela Brites2
- Emma Rand2
- Erwan Corre2
- Esteban Perez-Wohlfeil2
- Evelyn Greeves2
- Galo A. Goig2
- James W. MacDonald2
- Jorge Buenabad-Chavez2
- Laura Leroi2
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- Biodiversity Genomics Academy 20231
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- Brandon Pickett1
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- Clea Siguret1
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- Computational Metagenomics1
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- Dipannita Ghosh1
- Egon Willighagen1
- Eija Korpelainen1
- Ellen McDonagh1
- Eric C. Anderson1
- Erik Hjerde1
- Espen Aberg1
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- Espen Åberg1
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- Fred Hutch Data Science Lab1
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- IB-ULFRI1
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- Jan Paces1
- Johann Confais1
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- Juha Tornroos1
- Katharina Hoff1
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- Keywan Hassani-Pak1
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- Linelle Abueg1
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- Mahul Chakraborty1
- Marc Christian Heuermann1
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- Melbourne Bioinformatics1
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- Saskia Hiltemann41
- Bérénice Batut38
- Helena Rasche36
- Björn Grüning35
- Anthony Bretaudeau28
- Cristóbal Gallardo12
- Canadian Bioinformatics Workshops8
- Deepti Varshney8
- Erin Becker8
- François Michonneau8
- Nicola Soranzo8
- Toby Hodges8
- maneesha8
- Jason Williams7
- Niall Beard7
- Tracy Teal7
- Tristan Reynolds7
- Zhian N. Kamvar7
- Bianca Peterson6
- C. Titus Brown6
- Delphine Lariviere6
- Taylor Reiter6
- Teresa Müller6
- Amanda Charbonneau5
- Anna Syme5
- Anton Nekrutenko5
- Dan Kerchner5
- Mark Fernandes5
- Rayna M Harris5
- Robert Davey5
- Stéphanie Robin5
- Wolfgang Maier5
- Anita Schürch4
- Gildas Le Corguillé4
- Nelly Sélem4
- Pete4
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- Sarah Stevens4
- Simon Bray4
- The Gulbenkian Training Programme in Bioinformatics4
- Annajiat Alim Rasel3
- Bazante Sanders3
- Bob Freeman3
- Brittany N. Lasseigne, PhD3
- David Pérez-Suárez3
- Fotis E. Psomopoulos3
- Hilmar Lapp3
- Isabel Cuesta3
- JCSzamosi3
- Jemma Stachelek3
- Kari L. Jordan, PhD3
- Katrin Leinweber3
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- Miaomiao Zhou3
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- Niclas Jareborg3
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- Associated Training Datasets46
- Associated Workflows41
- Beacon v2: a discovery tool for genomic and pheno-clinical data1
- DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Genomics England PanelApp1
- Introduction to the EGA and sharing sensitive data1
- REPET image Docker1
- Slides | Beacon v2: a discovery tool for genomic and pheno-clinical data1
- Slides | DisGeNET: a discovery platform designed to address a variety of questions concerning the genetic underpinning of human diseases1
- Slides | GPAP: the RD-Connect Genome-Phenome Analysis Platform for diagnosis and gene discovery in rare disease research1
- Slides | Introduction to the EGA and sharing sensitive data1
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Training materials

Scientific topics: Genome annotation

224 materials found

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Training materials

RNA-seq data analysis using Chipster

ELIXIR TtR course: Basic genomics using advanced analysis tools

Hands-on workshop in Marine Metagenomics

How to install and load the Identifier Mapping Service with data needed for gene-to-variant and variant-to-gene