Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • Spaces
  • Events
  • Materials
  • Workflows
  • Collections
  • e-Learning
  • Learning paths
  • Directory
    • Providers
    • Nodes

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Transcriptomics
    • Algorithms70
    • Computer programming70
    • Data structures70
    • Programming languages70
    • Software development70
    • Software engineering70
    • Exomes49
    • Genome annotation49
    • Genomes49
    • Genomics49
    • Personal genomics49
    • Synthetic genomics49
    • Viral genomics49
    • Whole genomes49
    • Biodiversity43
    • Bayesian methods41
    • Biostatistics41
    • Descriptive statistics41
    • Gaussian processes41
    • Inferential statistics41
    • Markov processes41
    • Multivariate statistics41
    • Probabilistic graphical model41
    • Probability41
    • Statistics41
    • Statistics and probability41
    • Bottom-up proteomics38
    • Comparative transcriptomics38
    • Discovery proteomics38
    • MS-based targeted proteomics38
    • MS-based untargeted proteomics38
    • Metaproteomics38
    • Peptide identification38
    • Protein and peptide identification38
    • Proteomics38
    • Quantitative proteomics38
    • Targeted proteomics38
    • Top-down proteomics38
    • Transcriptome38
    • Biological sequences36
    • Sequence analysis36
    • Sequence databases36
    • Community analysis33
    • Environmental microbiology33
    • Metagenomics33
    • Microbial ecology33
    • Microbiome33
    • Molecular community analysis33
    • Shotgun metagenomics33
    • Computational ecology30
    • Ecoinformatics30
    • Ecological informatics30
    • Ecology30
    • Ecosystem science30
    • Assembly27
    • Sequence assembly27
    • Antimicrobial stewardship26
    • Data management26
    • Medical microbiology26
    • Metadata management26
    • Microbial genetics26
    • Microbial physiology26
    • Microbial surveillance26
    • Microbiological surveillance26
    • Microbiology26
    • Molecular infection biology26
    • Molecular microbiology26
    • Research data management (RDM)26
    • DNA variation23
    • Genetic variation23
    • Genomic variation23
    • Mutation23
    • Polymorphism23
    • Somatic mutations23
    • Diffraction experiment21
    • Imaging21
    • Microscopy21
    • Microscopy imaging21
    • Optical super resolution microscopy21
    • Photonic force microscopy21
    • Photonic microscopy21
    • Rare diseases21
    • Bioinformatics18
    • Taxonomy17
    • Exometabolomics13
    • LC-MS-based metabolomics13
    • MS-based metabolomics13
    • MS-based targeted metabolomics13
    • MS-based untargeted metabolomics13
    • Mass spectrometry-based metabolomics13
    • Metabolites13
    • Metabolome13
    • Metabolomics13
    • Metabonomics13
    • NMR-based metabolomics13
    • Protein structure12
    • Protein structure analysis12
    • Protein tertiary structure12
    • FAIR data11
    • Show N_FILTERS more
    • Tool
    • Galaxy32
    • FastQC5
    • MultiQC5
    • GOseq4
    • HISAT24
    • RSeQC4
    • SAMtools4
    • STAR4
    • BEDTools3
    • DESeq23
    • SCANPY3
    • Salmon3
    • anndata3
    • ggplot23
    • Biopython2
    • Cutadapt2
    • DeepTools2
    • DropletUtils2
    • Falco2
    • FeatureCounts2
    • R2
    • Trimmomatic2
    • UMI-tools2
    • annotatemyids2
    • Alevin1
    • ChiRA1
    • EGSEA1
    • GOEnrichment1
    • Heinz1
    • IsoformSwitchAnalyzeR1
    • MEME1
    • MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC1
    • Peakachu1
    • PfamScan1
    • RCAS1
    • SRA Software Toolkit1
    • StringTie1
    • Subread1
    • Targetfinder.org1
    • Trim Galore1
    • Trinity1
    • blockbuster1
    • fastp1
    • fgsea1
    • gffcompare1
    • gffread1
    • limma1
    • miRDeep21
    • pathview1
    • pyGenomeTracks1
    • rnaQUAST1
    • Show N_FILTERS more
    • Content provider
    • GTN37
    • European Bioinformatics Institute (EBI)1
    • Show N_FILTERS more
    • Keyword
    • Transcriptomics24
    • Single Cell13
    • paper-replication6
    • MIGHTS5
    • mouse4
    • work-in-progress4
    • 10x3
    • QC3
    • bulk3
    • collections3
    • rna-seq3
    • cyoa2
    • interactive-tools2
    • plants2
    • transcriptomics2
    • PCA1
    • Spatial omics1
    • alternative splicing1
    • clustering1
    • deconvolution1
    • deutsch1
    • drosophila1
    • español1
    • isoform switching1
    • italiano1
    • jupyter-notebook1
    • limma-voom1
    • metatranscriptomics1
    • miRNA1
    • multi-omics data integration1
    • network analysis1
    • single-cell1
    • stress tolerance1
    • viz1
    • Show N_FILTERS more
    • Competency level
    • Beginner34
    • Intermediate2
    • Advanced1
    • Not specified1
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International37
    • License Not Specified1
    • Show N_FILTERS more
    • Target audience
    • Students37
    • Clinicians1
    • PhD students1
    • Show N_FILTERS more
    • Author
    • Maria Doyle8
    • Mehmet Tekman8
    • Pavankumar Videm7
    • Bérénice Batut5
    • Wendi Bacon5
    • Belinda Phipson3
    • Cristóbal Gallardo3
    • Mallory Freeberg3
    • Anika Erxleben2
    • Anthony Bretaudeau2
    • Beatriz Serrano-Solano2
    • Hans-Rudolf Hotz2
    • Harriet Dashnow2
    • Julia Jakiela2
    • Lucille Delisle2
    • Mo Heydarian2
    • Nicola Soranzo2
    • Alex Ostrovsky1
    • Andrea Bagnacani1
    • Anna Trigos1
    • Anne Siegel1
    • Anton Nekrutenko1
    • Casper de Visser1
    • Chao Zhang1
    • Charity Law1
    • Charlotte Adang1
    • Clemens Blank1
    • Daniel Blankenberg1
    • Daniel Maticzka1
    • Diana Chiang Jurado1
    • Erwan Corre1
    • Florian Heyl1
    • Fotis E. Psomopoulos1
    • Gildas Le Corguillé1
    • Graham Etherington1
    • Helena Rasche1
    • IGC Bioinformatics Unit1
    • Iacopo Cristoferi1
    • Jonathan Manning1
    • Jovana Maksimovic1
    • Marek Ostaszewski1
    • Mateo Boudet1
    • Matt Ritchie1
    • Matti Hoch1
    • Myrthe van Baardwijk1
    • Olivier Dameron1
    • Peter van Heusden1
    • Peter-Bram 't Hoen1
    • Saskia Hiltemann1
    • Shian Su1
    • Sofoklis Keisaris1
    • Toby Hodges1
    • Wolfgang Maier1
    • Xavier Garnier1
    • Xi Liu1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann35
    • Helena Rasche33
    • Björn Grüning31
    • Nicola Soranzo16
    • Pavankumar Videm16
    • Bérénice Batut15
    • Mehmet Tekman15
    • Wendi Bacon11
    • Anthony Bretaudeau8
    • Gildas Le Corguillé8
    • Lucille Delisle7
    • Maria Doyle6
    • Martin Čech6
    • Niall Beard6
    • Cristóbal Gallardo5
    • Julia Jakiela5
    • Simon Bray4
    • William Durand4
    • Amirhossein Naghsh Nilchi3
    • Armin Dadras3
    • Beatriz Serrano-Solano3
    • Hans-Rudolf Hotz3
    • Mallory Freeberg3
    • Marisa Loach3
    • Marius van den Beek3
    • Pablo Moreno3
    • Stéphanie Robin3
    • Teresa Müller3
    • David López2
    • Florian Heyl2
    • Jonathan Manning2
    • Matthias Bernt2
    • Morgan Howells2
    • Nate Coraor2
    • Wolfgang Maier2
    • Xavier Garnier2
    • Andrea Bagnacani1
    • Anika Erxleben1
    • Anne Fouilloux1
    • CicoZhang1
    • Clea Siguret1
    • Clemens Blank1
    • Diana Chiang Jurado1
    • Donny Vrins1
    • Ekaterina Polkh1
    • Fotis E. Psomopoulos1
    • Graeme Tyson1
    • Graham Etherington1
    • IGC Bioinformatics Unit1
    • James Taylor1
    • José Manuel Domínguez1
    • Linelle Abueg1
    • Mateusz Kuzak1
    • Matti Hoch1
    • Mira Kuntz1
    • Mo Heydarian1
    • Mohua Das1
    • Mélanie Petera1
    • Peter-Bram 't Hoen1
    • Sanjay Kumar Srikakulam1
    • Sofoklis Keisaris1
    • The Carpentries1
    • Tristan Reynolds1
    • Show N_FILTERS more
    • Resource type
    • e-learning
    • Recorded webinar15
    • slides11
    • hands-on tutorial4
    • Training materials2
    • Tutorial2
    • Bioinformatics1
    • Coding1
    • Computational Biology1
    • Computer Science1
    • Course materials1
    • Data Science1
    • E-Learning1
    • Education1
    • Machine Learning1
    • Programming1
    • Slides1
    • Transcriptomics1
    • Video1
    • course materials1
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets35
    • Associated Workflows30
    • Jupyter Notebook (with Solutions)1
    • Jupyter Notebook (without Solutions)1
    • Show N_FILTERS more
    • Node
    • EMBL-EBI1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

e-Learning

  • Subscribe via email

Email Subscription

Resource type: e-learning

and Scientific topics: Transcriptomics

38 e-learning materials found
  • ELIXIR TeSS

    e-learning

    Differential abundance testing of small RNAs

    • Beginner
    Transcriptomics Transcriptomics
  • ELIXIR TeSS

    e-learning

    Clustering 3K PBMCs with Scanpy

    • Beginner
    Transcriptomics 10x Single Cell
  • ELIXIR TeSS

    e-learning

    Analysis of plant scRNA-Seq Data with Scanpy

    • Beginner
    Transcriptomics 10x Single Cell paper-replication plants
  • ELIXIR TeSS

    e-learning

    GO Enrichment Analysis

    • Beginner
    Transcriptomics Transcriptomics
  • ELIXIR TeSS

    e-learning

    1: RNA-Seq reads to counts

    • Beginner
    Transcriptomics QC Transcriptomics collections mouse
  • ELIXIR TeSS

    e-learning

    2: RNA-seq counts to genes

    • Beginner
    Transcriptomics QC Transcriptomics limma-voom mouse
  • ELIXIR TeSS

    e-learning

    Single-cell quality control with scater

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • ELIXIR TeSS

    e-learning

    Visualization of RNA-Seq results with heatmap2

    • Beginner
    Transcriptomics Transcriptomics
  • ELIXIR TeSS

    e-learning

    Downstream Single-cell RNA analysis with RaceID

    • Beginner
    Transcriptomics Single Cell work-in-progress
  • ELIXIR TeSS

    e-learning

    Reference-based RNAseq data analysis (long)

    • Beginner
    Transcriptomics Transcriptomics
  • 1
  • 2
  • 3
  • 4
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.