Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Genome annotation201
    • Comparative transcriptomics180
    • Exomes180
    • Genomes180
    • Genomics180
    • Personal genomics180
    • Synthetic genomics180
    • Transcriptome180
    • Transcriptomics180
    • Viral genomics180
    • Whole genomes180
    • R150
    • R program150
    • R script150
    • Bayesian methods122
    • Biostatistics122
    • Descriptive statistics122
    • Gaussian processes122
    • Inferential statistics122
    • Markov processes122
    • Multivariate statistics122
    • Probabilistic graphical model122
    • Probability122
    • Statistics122
    • Statistics and probability122
    • MicroRNA sequencing117
    • RNA sequencing117
    • RNA-Seq117
    • RNA-Seq analysis117
    • Small RNA sequencing117
    • Small RNA-Seq117
    • Small-Seq117
    • Transcriptome profiling117
    • WTSS117
    • Whole transcriptome shotgun sequencing117
    • miRNA-seq117
    • Algorithms116
    • Computer programming116
    • Data structures116
    • Programming languages116
    • Software development116
    • Software engineering116
    • Chromosome walking104
    • Clone verification104
    • DNA-Seq104
    • DNase-Seq104
    • High throughput sequencing104
    • High-throughput sequencing104
    • NGS104
    • NGS data analysis104
    • Next gen sequencing104
    • Next generation sequencing104
    • Panels104
    • Primer walking104
    • Sanger sequencing104
    • Sequencing104
    • Targeted next-generation sequencing panels104
    • Active learning78
    • Ensembl learning78
    • Kernel methods78
    • Knowledge representation78
    • Machine learning78
    • Neural networks78
    • Recommender system78
    • Reinforcement learning78
    • Supervised learning78
    • Unsupervised learning78
    • Data management75
    • Metadata management75
    • Research data management (RDM)75
    • Python74
    • Python program74
    • Python script74
    • py74
    • Metagenomics73
    • Shotgun metagenomics73
    • Single-cell genomics60
    • Single-cell sequencing60
    • Antimicrobial stewardship55
    • FAIR data55
    • Findable, accessible, interoperable, reusable data55
    • Medical microbiology55
    • Microbial genetics55
    • Microbial physiology55
    • Microbial surveillance55
    • Microbiological surveillance55
    • Microbiology55
    • Molecular infection biology55
    • Molecular microbiology55
    • Bottom-up proteomics54
    • Discovery proteomics54
    • MS-based targeted proteomics54
    • MS-based untargeted proteomics54
    • Metaproteomics54
    • Peptide identification54
    • Protein and peptide identification54
    • Proteomics54
    • Quantitative proteomics54
    • Targeted proteomics54
    • Top-down proteomics54
    • Show N_FILTERS more
    • Tool
    • Galaxy31
    • QUAST12
    • BUSCO9
    • Bandage8
    • FastQC8
    • Flye6
    • NanoPlot6
    • Unicycler5
    • fastp5
    • Merqury4
    • Minimap24
    • MultiQC4
    • SAMtools4
    • BEDTools3
    • BWA3
    • BamTools3
    • Bwa-mem23
    • GenomeScope 2.03
    • JBrowse3
    • gfastats3
    • seqtk3
    • BCFtools2
    • Cutadapt2
    • Medaka2
    • OMArk2
    • SPAdes2
    • STAR2
    • VelvetOptimiser2
    • dRep2
    • gffread2
    • kraken22
    • pilon2
    • snippy2
    • ABRicate1
    • BLAST1
    • Bakta1
    • Bowtie 21
    • COMBAT-TB Workbench1
    • CONCOCT1
    • CheckM1
    • Circos1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • CoverM1
    • Diamond1
    • Falco1
    • FastTree1
    • Filtlong1
    • FreeBayes1
    • Galactic Circos1
    • Helixer1
    • Jvarkit1
    • KrakenTools1
    • MEGAHIT1
    • MLST1
    • MaxBin1
    • MetaBAT 21
    • NGSUtils1
    • Newick Utilities1
    • Polypolish1
    • QualiMap1
    • Racon1
    • SALSA1
    • SRA Software Toolkit1
    • Smudgeplots1
    • Vcflib1
    • compute_sequence_length1
    • dastool1
    • ggplot21
    • metaspades1
    • purge_dups1
    • shovill1
    • taxonomy_krona_chart1
    • Show N_FILTERS more
    • Content provider
    • GTN34
    • European Bioinformatics Institute (EBI)2
    • Show N_FILTERS more
    • Keyword
    • Assembly26
    • biodiversity13
    • microgalaxy11
    • assembly9
    • prokaryote6
    • jbrowse15
    • nanopore4
    • Microbiome3
    • Variant Analysis3
    • metagenomics3
    • pacbio3
    • plants3
    • Braker32
    • Genome Annotation2
    • VGP2
    • binning2
    • covid192
    • eukaryota2
    • eukaryote2
    • gmod2
    • illumina2
    • Heatmap1
    • Helixer1
    • Microbial DNA1
    • Nanopore data analysis1
    • Pathogens detection1
    • Phylogenetic tree1
    • QC1
    • amr1
    • animals1
    • cyoa1
    • denovo1
    • genome1
    • genomics1
    • one-health1
    • polishing1
    • quality control1
    • tuberculosis1
    • Show N_FILTERS more
    • Competency level
    • Beginner23
    • Intermediate11
    • Not specified2
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International34
    • License Not Specified2
    • Show N_FILTERS more
    • Target audience
    • Students34
    • Clinicians1
    • PhD students1
    • Show N_FILTERS more
    • Author
    • Delphine Lariviere9
    • Simon Gladman9
    • Anton Nekrutenko7
    • Anthony Bretaudeau5
    • Bérénice Batut5
    • Alexandre Cormier4
    • Anna Syme4
    • Cristóbal Gallardo4
    • Laura Leroi4
    • Stéphanie Robin4
    • Alex Ostrovsky3
    • Erwan Corre3
    • Paul Zierep3
    • Bazante Sanders2
    • Brandon Pickett2
    • Helena Rasche2
    • Linelle Abueg2
    • Romane LIBOUBAN2
    • Solenne Correard2
    • Vini Salazar2
    • Christophe Klopp1
    • Engy Nasr1
    • Fabian Recktenwald1
    • Fotis E. Psomopoulos1
    • Giulio Formenti1
    • Grace Hall1
    • Marcella Sozzoni1
    • Nikos Pechlivanis1
    • Peter van Heusden1
    • Polina Polunina1
    • Saskia Hiltemann1
    • Thoba Lose1
    • Tom Brown1
    • Torsten Seemann1
    • Tristan Reynolds1
    • Wolfgang Maier1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann32
    • Bérénice Batut27
    • Helena Rasche27
    • Björn Grüning24
    • Cristóbal Gallardo18
    • Anthony Bretaudeau13
    • Niall Beard9
    • Nicola Soranzo9
    • Deepti Varshney8
    • Delphine Lariviere7
    • Anton Nekrutenko6
    • Teresa Müller6
    • William Durand6
    • Anna Syme5
    • Paul Zierep5
    • Tristan Reynolds5
    • Alexandre Cormier4
    • Maria Doyle4
    • Simon Gladman4
    • Wolfgang Maier4
    • Gildas Le Corguillé3
    • Linelle Abueg3
    • Natalie Whitaker-Allen3
    • Solenne Correard3
    • Bazante Sanders2
    • Erwan Corre2
    • Laura Leroi2
    • Miaomiao Zhou2
    • Mélanie Petera2
    • Nate Coraor2
    • Peter van Heusden2
    • Saim Momin2
    • Stéphanie Robin2
    • Alex Ostrovsky1
    • Anne Fouilloux1
    • Armin Dadras1
    • Engy Nasr1
    • Enis Afgan1
    • Giuseppe Defazio1
    • Hans-Rudolf Hotz1
    • Jennifer Hillman-Jackson1
    • Marius van den Beek1
    • Matúš Kalaš1
    • Nikos Pechlivanis1
    • Polina Polunina1
    • Romane LIBOUBAN1
    • Tom Brown1
    • Verena Moosmann1
    • Vijay1
    • Yvan Le Bras1
    • pimarin1
    • Show N_FILTERS more
    • Resource type
    • e-learning27
    • slides8
    • Recorded webinar1
    • Show N_FILTERS more
    • Related resource
    • Associated Workflows29
    • Associated Training Datasets28
    • Show N_FILTERS more
    • Node
    • EMBL-EBI2
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Register training material

Scientific topics: Assembly

and User: scraper

36 materials found
  • slides

    Deeper look into Genome Assembly algorithms

    •• Intermediate
    Sequence assembly Assembly
  • slides

    An introduction to get started in genome assembly and annotation

    • Beginner
    Sequence assembly Assembly
  • slides

    Unicycler Assembly

    • Beginner
    Sequence assembly Assembly prokaryote
  • slides

    Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

    • Beginner
    Sequence assembly Assembly covid19
  • slides

    An Introduction to Genome Assembly

    • Beginner
    Sequence assembly Assembly
  • slides

    De Bruijn Graph Assembly

    • Beginner
    Sequence assembly Assembly
  • 1
  • 2
  • 3
  • 4
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.