Training eSupport System
  • Log In
    • Log in with LS Login
    • Login
    • Register
  • About
  • Events
  • Materials
  • e-Learning
  • Workflows
  • Collections
  • Learning paths
  • Directory
    • Providers
    • Nodes
    • Spaces

TeSSHub makes use of some necessary cookies to provide its core functionality. Additionally, we make use of Google Analytics to discover how people are using TeSSHub in order to help us improve the service. To opt out of this, choose the "Allow necessary cookies" option.

See our Privacy Policy for more information.

You can modify your cookie preferences at any time here, or from the link in the footer.

Allow necessary cookies Allow all cookies
  1. Home
  2. Materials

Filter

  • Sort

  • Filter Clear filters

    • Date added
    • In the last 24 hours
    • In the last 1 week
    • In the last 1 month
    • Scientific topic
    • Genome annotation202
    • Exomes181
    • Genomes181
    • Genomics181
    • Personal genomics181
    • Synthetic genomics181
    • Viral genomics181
    • Whole genomes181
    • Comparative transcriptomics180
    • Transcriptome180
    • Transcriptomics180
    • R150
    • R program150
    • R script150
    • Bayesian methods122
    • Biostatistics122
    • Descriptive statistics122
    • Gaussian processes122
    • Inferential statistics122
    • Markov processes122
    • Multivariate statistics122
    • Probabilistic graphical model122
    • Probability122
    • Statistics122
    • Statistics and probability122
    • MicroRNA sequencing117
    • RNA sequencing117
    • RNA-Seq117
    • RNA-Seq analysis117
    • Small RNA sequencing117
    • Small RNA-Seq117
    • Small-Seq117
    • Transcriptome profiling117
    • WTSS117
    • Whole transcriptome shotgun sequencing117
    • miRNA-seq117
    • Algorithms116
    • Computer programming116
    • Data structures116
    • Programming languages116
    • Software development116
    • Software engineering116
    • Chromosome walking104
    • Clone verification104
    • DNA-Seq104
    • DNase-Seq104
    • High throughput sequencing104
    • High-throughput sequencing104
    • NGS104
    • NGS data analysis104
    • Next gen sequencing104
    • Next generation sequencing104
    • Panels104
    • Primer walking104
    • Sanger sequencing104
    • Sequencing104
    • Targeted next-generation sequencing panels104
    • Active learning78
    • Ensembl learning78
    • Kernel methods78
    • Knowledge representation78
    • Machine learning78
    • Neural networks78
    • Recommender system78
    • Reinforcement learning78
    • Supervised learning78
    • Unsupervised learning78
    • Data management75
    • Metadata management75
    • Research data management (RDM)75
    • Python74
    • Python program74
    • Python script74
    • py74
    • Metagenomics73
    • Shotgun metagenomics73
    • Single-cell genomics60
    • Single-cell sequencing60
    • Antimicrobial stewardship55
    • FAIR data55
    • Findable, accessible, interoperable, reusable data55
    • Medical microbiology55
    • Microbial genetics55
    • Microbial physiology55
    • Microbial surveillance55
    • Microbiological surveillance55
    • Microbiology55
    • Molecular infection biology55
    • Molecular microbiology55
    • Bottom-up proteomics54
    • Discovery proteomics54
    • MS-based targeted proteomics54
    • MS-based untargeted proteomics54
    • Metaproteomics54
    • Peptide identification54
    • Protein and peptide identification54
    • Proteomics54
    • Quantitative proteomics54
    • Targeted proteomics54
    • Top-down proteomics54
    • Show N_FILTERS more
    • Tool
    • Galaxy28
    • taxonomy_krona_chart10
    • FastQC6
    • MultiQC6
    • MetaPhlAn5
    • KrakenTools4
    • fastp4
    • kraken24
    • Bracken3
    • Cutadapt3
    • GraPhlAn3
    • Newick Utilities3
    • SortMeRNA3
    • export2graphlan3
    • humann3
    • mothur3
    • BEDTools2
    • Combine Metaphlan and HUMAnN2
    • HUMAnN22
    • MaxQuant2
    • Minimap22
    • NanoPlot2
    • Recentrifuge2
    • UniProt2
    • dRep2
    • ggplot22
    • lotus22
    • metaQuantome2
    • ABRicate1
    • BCFtools1
    • Bakta1
    • BamTools1
    • Bandage1
    • Bowtie 21
    • CONCOCT1
    • CheckM1
    • Clair31
    • Clustal 2 (Clustal W, Clustal X)1
    • FASTX-Toolkit1
    • Falco1
    • FastTree1
    • Flye1
    • Infernal1
    • Krona1
    • MAPseq1
    • MLST1
    • MSstats1
    • MaxBin1
    • Medaka1
    • MetaBAT 21
    • MetaNovo1
    • PRINSEQ1
    • Racon1
    • SAMtools1
    • SRA Software Toolkit1
    • SeqPrep1
    • Trimmomatic1
    • Unicycler1
    • Unipept1
    • ampvis1
    • biomformat1
    • bx-python1
    • cmsearch-deoverlap1
    • dada21
    • dastool1
    • miniasm1
    • msConvert1
    • phyloseq1
    • staramr1
    • Show N_FILTERS more
    • Content provider
    • GTN32
    • European Bioinformatics Institute (EBI)15
    • Show N_FILTERS more
    • Keyword
    • Microbiome28
    • microgalaxy20
    • metagenomics8
    • 16S5
    • label-TMT115
    • metabarcoding5
    • diversity4
    • taxonomic profiling4
    • nanopore3
    • Proteomics2
    • assembly2
    • bacteria2
    • binning2
    • illumina2
    • metatranscriptomics2
    • microbiome2
    • Ecology1
    • Environmental DNA1
    • Heatmap1
    • Nanopore data analysis1
    • Open access1
    • Pathogens detection1
    • Phylogenetic tree1
    • Sequence analysis1
    • amplicon1
    • amr1
    • beer1
    • citizen science1
    • cyoa1
    • eDNA1
    • ecology1
    • fungi1
    • host-removal1
    • microbial ecosystems1
    • plants1
    • plasmids1
    • preprocessing1
    • taxonomic abundance1
    • taxonomy1
    • Show N_FILTERS more
    • Competency level
    • Beginner28
    • Not specified15
    • Intermediate4
    • Show N_FILTERS more
    • Licence
    • Creative Commons Attribution 4.0 International32
    • License Not Specified15
    • Show N_FILTERS more
    • Target audience
    • Students32
    • Clinicians2
    • PhD students2
    • Show N_FILTERS more
    • Author
    • Bérénice Batut16
    • Subina Mehta10
    • Saskia Hiltemann8
    • Paul Zierep6
    • Dechen Bhuming5
    • Katherine Do5
    • Pratik Jagtap5
    • Emma Leith4
    • Praveen Kumar4
    • Dave Clements2
    • Engy Nasr2
    • Marie Crane2
    • QIIME22
    • Ray Sajulga2
    • Sophia Hampe2
    • Timothy J. Griffin2
    • Clea Siguret1
    • Cristóbal Gallardo1
    • Didier Debroas1
    • Fabio Cumbo1
    • Fotis E. Psomopoulos1
    • Mina Hojat Ansari1
    • Nadia Goué1
    • Nikos Pechlivanis1
    • Polina Polunina1
    • Rand Zoabi1
    • Siyu Chen1
    • Sujai Kumar1
    • Teresa Müller1
    • Vini Salazar1
    • Willem de Koning1
    • Show N_FILTERS more
    • Contributor
    • Saskia Hiltemann24
    • Bérénice Batut19
    • Helena Rasche15
    • Björn Grüning14
    • Paul Zierep11
    • Cristóbal Gallardo6
    • Deepti Varshney5
    • Pratik Jagtap5
    • Teresa Müller5
    • Timothy J. Griffin5
    • Tristan Reynolds5
    • Clea Siguret3
    • Engy Nasr3
    • Natalie Whitaker-Allen3
    • Nicola Soranzo3
    • Subina Mehta3
    • William Durand3
    • Anna Syme2
    • Christine Oger2
    • Igor Makunin2
    • Mallory Freeberg2
    • Melanie Föll2
    • Michael Thang2
    • Niall Beard2
    • Willem de Koning2
    • Wolfgang Maier2
    • Armin Dadras1
    • Beatriz Serrano-Solano1
    • Bert Droesbeke1
    • Bethan Manley1
    • Daniel Blankenberg1
    • Gildas Le Corguillé1
    • Giuseppe Defazio1
    • Hans-Rudolf Hotz1
    • Linelle Abueg1
    • Matthias Bernt1
    • Nate Coraor1
    • Nikos Pechlivanis1
    • Nuwan Goonasekera1
    • Santino Faack1
    • Siyu Chen1
    • Sophia Hampe1
    • Sujai Kumar1
    • Tarnima Omara1
    • Verena Moosmann1
    • Vini Salazar1
    • mmiladi1
    • Show N_FILTERS more
    • Resource type
    • e-learning32
    • Recorded webinar13
    • slides2
    • Show N_FILTERS more
    • Related resource
    • Associated Training Datasets28
    • Associated Workflows27
    • Show N_FILTERS more
    • Node
    • EMBL-EBI15
    • Show N_FILTERS more
    • Collection
    • ELIXIR Biodiversity Community1
    • Show N_FILTERS more
  • Show materials from all spaces
  • Show disabled materials
  • Show materials with broken links
  • Show archived materials

Training materials

  • Subscribe via email
  • Harvest using OAI-PMH

Email Subscription

Harvest using OAI-PMH

Exchange content using OAI-PMH

Use an OAI-PMH compatible tool to harvest metadata using the OAI-PMH endpoint. In particular, this endpoint can be used for exchanging content between different TeSS instances. See the TeSS documentation for more details.

Register training material

Scientific topics: Community analysis

and User: scraper

47 materials found
  • Recorded webinar

    Exploring metagenomes to assess microbiomes across the globe

    ELIXIR node event
    Microbiology Microbial ecology Metagenomic sequencing
  • Recorded webinar

    Investigating microbial ecology in extreme habitats

    ELIXIR node event
    Microbiology Microbial ecology Metagenomic sequencing
  • Recorded webinar

    Developing an improved understanding of the structure and function of the wheat root microbiome

    ELIXIR node event
    Microbial ecology Agricultural science
  • Recorded webinar

    MGnify API: accessing microbiome data computationally

    ELIXIR node event
    Microbial ecology
  • Recorded webinar

    MGnify today: analysing microbiome data

    ELIXIR node event
    Microbial ecology
  • e-learning

    metaQuantome 3: Taxonomy

    •• Intermediate
    Proteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy Proteomics microgalaxy
  • e-learning

    metaQuantome 2: Function

    •• Intermediate
    Proteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Proteomics microgalaxy
  • 1
  • 2
  • 3
  • 4
  • 5
Training eSupport System
[email protected]
Contribute
About TeSSHub
Browse Spaces
Funding & acknowledgements
Privacy
Cookie preferences
Version: 1.5.1
Source code
API documentation
Bioschemas testing tool

TeSSHub has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No. 676559.