France
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ELIXIR TeSS
PDF
PacBio de novo genome assembly - Hands on exercise
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ELIXIR TeSS
Variants: alignment and pre-treatment; GATK
Genomics
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ELIXIR TeSS
Initiation to R programming and descriptive statistics
• BeginnerR-programming Descriptive statistics Statistics Bioinformatics -
ELIXIR TeSS
Getting started with Bioschemas
• BeginnerBioschemas Standards -
ELIXIR TeSS
Training materials
FAIR principles applied to bioinformatics
•• IntermediateFAIR Reproducible Science Open science Data analysis Data processing -
ELIXIR TeSS
Chip-seq: Pattern Analysis tutorial
Chip-seq NGS Pattern recognition
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ELIXIR TeSS
Training materials
Plant Phenotyping Data managment (MIAPPE)
• BeginnerPhenomics Plant biology Data management Annotation Data formatting Plant Phenotyping Data-format data sharing -
ELIXIR TeSS
IFB Shiny training
•• IntermediateR-programming Reproducible Science -
ELIXIR TeSS
Online material, online course
Workshop on Resources for Plant Sciences, 2023
•• IntermediatePlant biology service bundle eLearning EeLP plant science Data Visualization Gene Ontology Knowledge graph MIAPPE -
ELIXIR TeSS
Webinar, Slides, Video
WheatIS DataDiscovery webinar
• BeginnerData management wheat information system data discovery -
ELIXIR TeSS
Variant Filtering
Genomics
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ELIXIR TeSS
Sequencing 6000 chloroplast genomes : the PhyloAlps project
metagenomics
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ELIXIR TeSS
Prototyping the new PSICQUIC 2.0
biohackaton 2018
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ELIXIR TeSS
RGP finder: prediction of Genomic Islands
CDS Data visualization Genomics RGP
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ELIXIR TeSS
Chip-seq: Functional Annotation tutorial
Chip-seq Functional Annotation NGS
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ELIXIR TeSS
MG-RAST — experiences from processing a quarter million metagenomic data sets
metagenomics
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ELIXIR TeSS
bio.tools & EDAM drop-in hackathon & discussions
biohackaton 2018
-
ELIXIR TeSS
PDF
Genome assembly with long reads
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ELIXIR TeSS
200 billion sequences and counting: analysis, discovery and exploration of datasets with EBI Metagenomics
metagenomics
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ELIXIR TeSS
Multiple Comparative Metagenomics using Multiset k-mer Counting
metagenomics
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ELIXIR TeSS
From Samples to Data : Assuring Downstream Analysis with Upstream Planning
metagenomics
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ELIXIR TeSS
Exploiting collisions between DNA molecules to characterize the genomic structures of complex communities
metagenomics
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ELIXIR TeSS
NGS data exploration with the MicroScope Platform
Genomics NGS RNA-seq SNP Transcriptomics
-
ELIXIR TeSS
Gut metagenomics in cardiometabolic diseases
metagenomics
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ELIXIR TeSS
Lecture, Presentation, Training materials
HemaFAIR Lecture 13 - A gentle introduction to federated learning
• BeginnerMachine learning Data protection Data mining FAIR principles HemaFAIR HELIOS Federated Learning Healthcare -
ELIXIR TeSS
New perspectives on nitrite-oxidizing bacteria - linking genomes to physiology
metagenomics
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ELIXIR TeSS
ETBII 2023
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ELIXIR TeSS
Welcome message
biohackaton
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ELIXIR TeSS
Holistic metagenomics in marine communities
metagenomics
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ELIXIR TeSS
Assessing microbial biogeography by using a metagenomic approach
metagenomics
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ELIXIR TeSS
Workshops and courses
Interactive Online Companionship - R formation Session 2027
2 October 2026 - 31 January 2027
Online
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ELIXIR TeSS
Workshops and courses
Galaxy Beyond Basics: Mastering Workflows, Automation, and Scalability 2026
12 - 16 October 2026
Paris, France
Face-to-face
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ELIXIR TeSS
Workshops and courses
Formation metabarcoding ABiMS SeBiMER
6 - 11 December 2026
Face-to-face
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ELIXIR TeSS
Workshops and courses
EB3I - Ecole de Bioinformatique niveau débutant 2026
15 - 20 November 2026
Face-to-face
-
ELIXIR TeSS
Workshops and courses
Analyses Single Cell RNA-seq (ScRNA-seq) avec R
1 - 2 October 2026
Bordeaux, France
Face-to-face
-
ELIXIR TeSS
Workshops and courses
Interactive Online Companionship - R formation Session 2027
2 October 2026 - 31 January 2027
Online
-
ELIXIR TeSS
Workshops and courses
Introduction to R
7 - 8 October 2026
Nantes
Face-to-face
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ELIXIR TeSS
Workshops and courses
AlphaFold et au-delà : Modélisation de la structure 3D des protéines avec des outils d’IA - édition 2027/ AlphaFold & beyond: 3D Protein Structure Modeling with AI Tools - 2027 session
20 - 22 January 2027
ORSAY CEDEX, France
Face-to-face
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ELIXIR TeSS
Workshops and courses
Analyses NGS avec R
24 - 25 September 2026
Bordeaux, France
Face-to-face
-
ELIXIR TeSS
Workshops and courses
Construction and analysis of eukaryotic pangenome graphs - 30 novembre 2026
30 November - 2 December 2026
Castanet-Tolosan, France
Face-to-face
-
ELIXIR TeSS
Workshops and courses
Introduction to single-cell RNAseq analysis
19 - 21 October 2026
Nantes
Face-to-face
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IFB French Institute of Bioinformatics
The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research...
149 training materials11 events (513 past events)IFB French Institute of Bioinformatics http://www.france-bioinformatique.fr https://pan-training.tesshub.org/content_providers/ifb-french-institute-of-bioinformatics The French Institute of Bioinformatics (CNRS IFB) is a national service infrastructure in bioinformatics. IFB’s principal mission is to provide basic services and resources in bioinformatics for scientists and engineers working in the life sciences. IFB is the French node of the European research infrastructure, ELIXIR. /system/content_providers/images/000/000/049/original/logo-ifb-couleur.svg?1663599376 -
Workflow4metabolomics
In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing,...
Workflow4metabolomics https://workflow4metabolomics.org https://pan-training.tesshub.org/content_providers/workflow4metaolomics In the context of collaboration between metabolomics (MetaboHUB French infrastructure) and bioinformatics platforms (IFB: Institut Français de Bioinformatique), we have developed full LC/MS, FIA-MS, GC/MS and NMR pipelines using Galaxy framework for data analysis including preprocessing, normalization, quality control, statistical analysis (Univariate, Multivariate PLS/OPLS) and annotation steps. Those modular and extensible workflows are composed with existing components (XCMS and CAMERA packages, etc.) but also a whole suite of complementary homemade tools. This implementation is accessible through a web interface, which guarantees the parameters completeness. The advanced features of Galaxy have made possible the integration of components from different sources and of different types. Thus, an extensible Virtual Research Environment (VRE) is offered to metabolomics communities (platforms, end users, etc.), and enables preconfigured workflows sharing for new users, but also experts in the field. /system/content_providers/images/000/000/659/original/17082156.png?1667905557
Activity log
