SIB Swiss Institute of Bioinformatics

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Materials (117)
Events (29)

Showing 30 materials out of 117

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ELIXIR TeSS

Bonsai: Exploratory Analysis of Single-cell Data

• Beginner
ELIXIR TeSS

e-learning

Data Repositories for Bioinformatics

• Beginner
Data management Online Repository Data reuse Data mining FAIR Data
ELIXIR TeSS

Introduction to Bayesian Statistics with R

•• Intermediate
biostatistics training
ELIXIR TeSS

Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• Beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
ELIXIR TeSS

Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• Beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
ELIXIR TeSS

e-learning

BLAST and multiple sequence alignment (MSA) programs

• Beginner
Sequence analysis Blast Multiple sequence alignment
ELIXIR TeSS

BLAST and multiple sequence alignment (MSA) programs

• Beginner
Blast E learning Multiple sequence alignment
ELIXIR TeSS

e-learning

UNIX Fundamentals

• Beginner
Computer science Problem based learning Programming Unix
ELIXIR TeSS

Tutorial, Slideshow, e-learning

High Performance Computing (HPC) in Life Sciences

• Beginner
Computer science Bioinformatics Biology High performance computing high-performance computing
ELIXIR TeSS

e-learning

neXtProt : Exploring human proteins

• Beginner
Proteins Proteomics Human biology
ELIXIR TeSS

e-learning

ISMARA: A tool to infer genome-wide regulatory interactions

• Beginner
Systems biology Gene regulation Transcription factors and regulatory sites Computational modelling Gene regulation
ELIXIR TeSS

e-learning

Cellosaurus : A resource on cell lines

• Beginner
Biosciences Experimental design and studies basic research Reproducibility cell line
ELIXIR TeSS

Vital-IT Infrastructure Usage
ELIXIR TeSS

e-learning

Explore and Visualize Your Data with Python

•• Intermediate
Data visualisation Bioinformatics Python Data analysis Data visualisation
ELIXIR TeSS

Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
ELIXIR TeSS

R Basics Quiz

• Beginner
ELIXIR TeSS

ViralZone

Phylogenetics of animal viral pathogens

• Beginner
Animal pathogens E learning Phylogenetics
ELIXIR TeSS

Video, E-learning

FAIR principles in practice for health data

• Beginner
Computer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework …
ELIXIR TeSS

ISMARA: A tool to infer genome-wide regulatory interactions
ELIXIR TeSS

Querying SIB resources with SPARQL
ELIXIR TeSS

SARS-CoV-2 : Studying a new virus
ELIXIR TeSS

Cybersecurity Quiz for SIB employees only (internal use)
ELIXIR TeSS

Getting Started With BioMedIT
ELIXIR TeSS

BioMedIT: Information Security Awareness Training
ELIXIR TeSS

Video, Training materials, E-learning

Validate Graph Data with SHACL

•• Intermediate
Medical informatics FAIR data Data management Computer science Validation Data handling Clinical data SHACL Data validation RDF …
ELIXIR TeSS

Video, Training materials with mock data, e-learning

Querying Data with SPARQL

• Beginner
Computer science Data management FAIR data Medical informatics Data mining Query and retrieval Database search Data handling Data retrieval Clinical data …
ELIXIR TeSS

High Performance Computing in Life Sciences
ELIXIR TeSS

UNIX Fundamentals
ELIXIR TeSS

e-learning

Interoperable File Formats

• Beginner
Data management Data formatting Interoperability File formats Standards
ELIXIR TeSS

e-learning

Interpret phylogenetic data to track SARS-CoV-2 evolution

• Beginner
Virology Phylogenetics SARS-CoV-2

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Bonsai: Exploratory Analysis of Single-cell Data

Data Repositories for Bioinformatics

Introduction to Bayesian Statistics with R

How to use V-pipe (SARS-CoV-2 data)

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

BLAST and multiple sequence alignment (MSA) programs

BLAST and multiple sequence alignment (MSA) programs

UNIX Fundamentals

High Performance Computing (HPC) in Life Sciences

neXtProt : Exploring human proteins

ISMARA: A tool to infer genome-wide regulatory interactions

Cellosaurus : A resource on cell lines

Vital-IT Infrastructure Usage

Explore and Visualize Your Data with Python

Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace

R Basics Quiz

Phylogenetics of animal viral pathogens

FAIR principles in practice for health data

ISMARA: A tool to infer genome-wide regulatory interactions

Querying SIB resources with SPARQL

SARS-CoV-2 : Studying a new virus

Cybersecurity Quiz for SIB employees only (internal use)

Getting Started With BioMedIT

BioMedIT: Information Security Awareness Training

Validate Graph Data with SHACL

Querying Data with SPARQL

High Performance Computing in Life Sciences

UNIX Fundamentals

Interoperable File Formats

Interpret phylogenetic data to track SARS-CoV-2 evolution

Biology-informed Multiomics Data Integration and Visualization

Biology-informed Integration and Visualisation of Multiomics Data

First Steps with Python in Life Sciences

Introduction to Machine Learning with Python

First Steps with R in Life Sciences

First Steps with R in Life Sciences

Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

Ligand-protein docking, and computer-aided drug design

Ligand-protein docking, and computer-aided drug design

Ligand-protein docking, and computer-aided drug design

Introduction to NGS ATAC-seq data analysis

Introduction to Small RNA-seq Data Analysis with R

Introduction to Sequencing Data Analysis

ELIXIR-GOBLET Train-the-Trainer

Computer-Aided Drug Design

Version Control with Git

Cancer Variant Analysis

Building Complex Apps with R Shiny

Version Control with Git

Single-Cell Transcriptomics with R

Introduction to Machine Learning with R

Ensuring More Accurate, Generalisable, and Interpretable Machine Learning Models for Bioinformatics

Nextflow in Action: Build Smarter, Faster, Reproducible Pipelines

ELIXIR-GOBLET Train-the-Trainer

Building and Maintaining Scientific Resources

Enrichment Analysis

Diving into Deep Learning - Theory and Applications with PyTorch

Introduction to High-performance Computing (sciCORE Cluster)

Data Visualisation with R