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e-learning

Data Repositories for Bioinformatics

• Beginner
Data management Online Repository Data reuse Data mining FAIR Data
Computer Software, workflow

How to use V-pipe (SARS-CoV-2 data)

• Beginner
Virology Genetic variation Workflows Variant calling Alignment Read pre-processing coronavirus NGS bioinformatics Variant-calling
Course design: Considerations for trainers – a Professional Guide

Curriculum development, course design, learning outcomes, Bloom's Taxonomy, assessment, course evaluation, training trainers, training material
Training materials

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

• Beginner
Bioinformatics for schools, basic bioinformatics, SARS-CoV-2 pandemic, genome analysis, protein sequence analysis, protein structure analysis, virus variants, spike protein, training material
IFB Shiny training

•• Intermediate
R-programming Reproducible Science
Population Genetics Notes

Population genetics Population genetics
e-learning

BLAST and multiple sequence alignment (MSA) programs

• Beginner
Sequence analysis Blast Multiple sequence alignment
BLAST and multiple sequence alignment (MSA) programs

• Beginner
Blast E learning Multiple sequence alignment
e-learning

UNIX Fundamentals

• Beginner
Computer science Problem based learning Programming Unix
Tutorial, Slideshow, e-learning

High Performance Computing (HPC) in Life Sciences

• Beginner
Computer science Bioinformatics Biology High performance computing high-performance computing
e-learning

neXtProt : Exploring human proteins

• Beginner
Proteins Proteomics Human biology
e-learning

ISMARA: A tool to infer genome-wide regulatory interactions

• Beginner
Systems biology Gene regulation Transcription factors and regulatory sites Computational modelling Gene regulation
e-learning

Cellosaurus : A resource on cell lines

• Beginner
Biosciences Experimental design and studies basic research Reproducibility cell line
Vital-IT Infrastructure Usage
e-learning

Explore and Visualize Your Data with Python

•• Intermediate
Data visualisation Bioinformatics Python Data analysis Data visualisation
Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace
Bedtools tutorial - sandbox.bio

Genomics Genomics
RNA-seq Bioinformatics - Introduction to bioinformatics for RNA sequence analysis

Transcriptomics RNA-Seq Genome annotation Genome assembly RNA-seq Genome annotation Transcriptomics Genome assembly
R Basics Quiz

• Beginner
ViralZone

Phylogenetics of animal viral pathogens

• Beginner
Animal pathogens E learning Phylogenetics
fhdsl/bash_for_bio

Unix/Linux
alexmojaki/futurecoder

Python script Python
PlantsAndPython/PlantsAndPython

Python script Python
Video, E-learning

FAIR principles in practice for health data

• Beginner
Computer science Data management FAIR data Medical informatics Standardisation and normalisation Design Clinical data RDF Knowledge graph Semantic framework …
bioinformatics-core-shared-training/IntroductionToStats

Statistics and probability Statistics
bioinformaticsdotca/PNA_2024

Pathway or network Pathways and Networks
carpentries-incubator/fair-bio-practice

Data management FAIR data FAIR data Reproducibility Data management
bioinformaticsdotca/STAT_2024

Statistics and probability Statistics R
girafe-ai/ml-course

Machine learning Machine learning
realpython/python-guide

Python script Python

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Training coordinator

Data Repositories for Bioinformatics

How to use V-pipe (SARS-CoV-2 data)

Course design: Considerations for trainers – a Professional Guide

Using bioinformatics to hunt SARS-CoV-2, its variants & its origins – a practical guide

IFB Shiny training

Population Genetics Notes

BLAST and multiple sequence alignment (MSA) programs

BLAST and multiple sequence alignment (MSA) programs

UNIX Fundamentals

High Performance Computing (HPC) in Life Sciences

neXtProt : Exploring human proteins

ISMARA: A tool to infer genome-wide regulatory interactions

Cellosaurus : A resource on cell lines

Vital-IT Infrastructure Usage

Explore and Visualize Your Data with Python

Introduction to 3D-Structure Visualization and Homology Modeling using the Swiss-Model Workspace

Bedtools tutorial - sandbox.bio

RNA-seq Bioinformatics - Introduction to bioinformatics for RNA sequence analysis

R Basics Quiz

Phylogenetics of animal viral pathogens

fhdsl/bash_for_bio

alexmojaki/futurecoder

PlantsAndPython/PlantsAndPython

FAIR principles in practice for health data

bioinformatics-core-shared-training/IntroductionToStats

bioinformaticsdotca/PNA_2024

carpentries-incubator/fair-bio-practice

bioinformaticsdotca/STAT_2024

girafe-ai/ml-course

realpython/python-guide

Ligand-protein docking, and computer-aided drug design

Genome bioinformatics: from short- to long-read sequencing | EMBL-EBI Training

Ligand-protein docking, and computer-aided drug design

Version Control with Git

First Steps with Python in Life Sciences

Introduction to High-performance Computing (sciCORE Cluster)

ELIXIR-GOBLET Train-the-Trainer

Building and Maintaining Scientific Resources

Cancer Variant Analysis

First Steps with R in Life Sciences

Advanced Programming with R

Biology-informed Multiomics Data Integration and Visualization

Ligand-protein docking, and computer-aided drug design

Introduction to NGS ATAC-seq data analysis

OMICSS-26

Version Control with Git

Building Complex Apps with R Shiny

Introduction to Machine Learning with Python

Single-Cell Transcriptomics with R

Advanced Programming with R

Introduction to High-performance Computing (sciCORE Cluster)

Introduction to Small RNA-seq Data Analysis with R

First Steps with R in Life Sciences

Introduction to Bulk RNA-Seq: From Quality Control to Pathway Analysis

Introduction to Sequencing Data Analysis

Introduction to Machine Learning with R

Nextflow in Action: Build Smarter, Faster, Reproducible Pipelines

ELIXIR-GOBLET Train-the-Trainer

Enrichment Analysis

Biology-informed Integration and Visualisation of Multiomics Data

SIB Swiss Institute of Bioinformatics

Glittr.org

BY-COVID

ERGA Knowledge Hub